PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN00077.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 313aa    MW: 34987 Da    PI: 8.0657
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN00077.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000235476123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ C + F++   L  H+++H
  KHN00077.1 54 YSCSFCRREFRSAQALGGHMNVH 76
                99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.5E-65180No hitNo description
PROSITE profilePS5015711.2195481IPR007087Zinc finger, C2H2
SMARTSM003550.00985476IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEQGQCWTKR KKYSLSSSTG SPTNPSYGDS WEEQAFAEDA ANSLGGCIWP PRSYSCSFCR  60
REFRSAQALG GHMNVHRRDR ARLKQQPTSP HNEILCHDLE TQLHKPVQSP FASLGGYLYP  120
SPLCGLACMK TNPNCDPDFV ASPSSSPSPS KALLAPSANI GTFREETMIP LYDSSILHKI  180
SPASNSSESW PNSAEDHRLY SCKFHPQADT TKPSKRIMDF RCRGNKGNND DIDGDINFNS  240
VVYRTHPSLQ FESTKEPDHI SCKKRKTDAS STLFSPKSSS VDRHQVQPKM FEFSPSSMEE  300
LDLELRLGNR SKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-124976229superman protein
2l1o_A2e-124976229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN00077.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028235243.10.0zinc finger protein 10-like
TrEMBLA0A0B2NX510.0A0A0B2NX51_GLYSO; Putative transcriptional regulator RABBIT EARS
STRINGGLYMA01G24820.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.13e-26zinc-finger protein 10
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]