PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHM99813.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 281aa MW: 30841 Da PI: 8.4156 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00021 | 216 | 238 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg Fs+ +L+ H ++ H KHM99813.1 216 QCPQCGAKFSSVTTLVDHVQKvH 238 7******************9988 PP | |||||||
2 | zf-C2H2 | 16 | 3.5e-05 | 253 | 275 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C++ F+++ L+ H + H KHM99813.1 253 VCPKCSRGFRDPVALVEHVEKdH 275 7*****************99888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118310 | 8.24E-12 | 4 | 59 | No hit | No description |
Gene3D | G3DSA:4.10.1110.10 | 3.9E-10 | 10 | 53 | IPR000058 | Zinc finger, AN1-type |
PROSITE profile | PS51039 | 7.716 | 10 | 56 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 6.5E-13 | 13 | 51 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 0.013 | 13 | 52 | IPR000058 | Zinc finger, AN1-type |
Gene3D | G3DSA:4.10.1110.10 | 1.8E-10 | 90 | 148 | IPR000058 | Zinc finger, AN1-type |
SuperFamily | SSF118310 | 5.89E-9 | 93 | 144 | No hit | No description |
PROSITE profile | PS51039 | 7.803 | 98 | 147 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 4.0E-8 | 101 | 140 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 0.19 | 101 | 142 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00355 | 0.0064 | 215 | 238 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.494 | 215 | 243 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13894 | 2.2E-4 | 216 | 238 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 217 | 238 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 6.5 | 252 | 275 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.663 | 252 | 280 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 254 | 275 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MGTPEFPDLG KHCAVSDCKL IDFLPFTCDR CDQVYCLEHR SYIKHLCTKA DKQDVTVVIC 60 PLCAKGVRLV PDQDPNITWE NHVNTECDPS NYEKVTKKKK CPVPGCREIL VFSNTIKCRD 120 CTVEHCLKHR FGPDHKCPGP KNVESSFSFM NLLNGSKKQE SKPKSSATTS SKWSTSFLNA 180 ASNIRASAEA GVSKLSAWQT ARGGVGQSHS SGQVEQCPQC GAKFSSVTTL VDHVQKVHER 240 SGNRSGAKVT IDVCPKCSRG FRDPVALVEH VEKDHGGSSR S |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in environmental stress response. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00306 | DAP | Transfer from AT2G41835 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHM99813.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098410 | 0.0 | BT098410.1 Soybean clone JCVI-FLGm-16J1 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003519070.1 | 0.0 | zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 | ||||
Refseq | XP_025981677.1 | 0.0 | zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 | ||||
Refseq | XP_028209812.1 | 0.0 | zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like | ||||
Refseq | XP_028209817.1 | 0.0 | zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like | ||||
Swissprot | Q0D5B9 | 1e-126 | SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 | ||||
TrEMBL | A0A0B2NX24 | 0.0 | A0A0B2NX24_GLYSO; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 | ||||
TrEMBL | I1JG86 | 0.0 | I1JG86_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G31550.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5864 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41835.1 | 1e-122 | C2H2 family protein |
Publications ? help Back to Top | |||
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