PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHM99706.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 178aa MW: 20103.8 Da PI: 8.5092 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.5 | 6.5e-18 | 10 | 54 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ eEd+l+++++ +lG++ W++Ia +++ gRt++++k++w+++ KHM99706.1 10 RGNFSLEEDQLIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 54 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-26 | 2 | 59 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.36E-16 | 2 | 61 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.781 | 5 | 59 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-16 | 9 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-16 | 10 | 54 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.29E-13 | 12 | 55 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
INYLRPDLKR GNFSLEEDQL IIKLHSLLGN KWSLIAGRLP GRTDNEIKNY WNTHIRRKLL 60 SRGIDPATHR PLNDSSHQEP AAVSAPPKQQ ESFHHERCPD LNLELTISPP HHPQPDHPHL 120 KTLVTNSNLC FPCSLGLHNS KDCSCALHTS TANATATGYD FLALKTTVVL DYRTLHMK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-15 | 2 | 59 | 51 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHM99706.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ555057 | 1e-101 | FJ555057.1 Glycine max transcription factor MYB047 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001235637.1 | 1e-128 | MYB transcription factor MYB48 | ||||
Refseq | XP_028234492.1 | 1e-128 | myb-related protein 308-like | ||||
Swissprot | P81393 | 1e-62 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A0B2NW49 | 1e-129 | A0A0B2NW49_GLYSO; Myb-related protein 308 (Fragment) | ||||
STRING | GLYMA06G00630.1 | 1e-127 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 5e-57 | myb domain protein 4 |
Publications ? help Back to Top | |||
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