PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK43718.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ZF-HD
Protein Properties Length: 168aa    MW: 19712.4 Da    PI: 9.7526
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK43718.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer78.86.8e-25353258
  ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                 ++++Y+eC++NhAa+lG++a+DGC+E+ +s       ++  CaACgCHR++HRr  +
   KFK43718.1  3 SSCVYRECMRNHAAKLGSYAIDGCREYSQS------LTGDLCAACGCHRSYHRRIDV 53
                 5789************************99......7888**************866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-19450IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.6E-17650IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152317.982751IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.8E-16750IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.604.4E-1696165IPR009057Homeodomain-like
SuperFamilySSF466892.78E-7100164IPR009057Homeodomain-like
TIGRFAMsTIGR015651.4E-30106165IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MQSSCVYREC MRNHAAKLGS YAIDGCREYS QSLTGDLCAA CGCHRSYHRR IDVKSSSQIP  60
HARFPFTSLR RVKQLARLKW KPAEEEEEED TGEETSTDEK MLTTVKRRRK SKFTAEQREA  120
MRDYAAKLGW TLKDKRAIRE EIRVFCEGIG VSRYLFKTWV NNNKKFYH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106111RRRKSK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00143DAPTransfer from AT1G14687Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK43718.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002890071.12e-96zinc-finger homeodomain protein 14
RefseqXP_006305721.12e-96zinc-finger homeodomain protein 14
SwissprotQ9LQW32e-95ZHD14_ARATH; Zinc-finger homeodomain protein 14
TrEMBLA0A087HNL61e-123A0A087HNL6_ARAAL; Uncharacterized protein
STRINGA0A087HNL61e-123(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137282124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14687.12e-96homeobox protein 32