PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK34438.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HSF
Protein Properties Length: 276aa    MW: 32166.4 Da    PI: 5.7801
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK34438.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.61.1e-34271182102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++e+++d+++++++sw+++g+sfvv+d ++f++ +Lp++Fkhsnf+SF+RQLn+YgFkk++ e+         weF+++ F  g+++ll++ik
    KFK34438.1  27 FLTKTFELVDDPNTDHIVSWNREGTSFVVWDLNSFSTILLPRHFKHSNFSSFIRQLNTYGFKKIDAER---------WEFANEGFLMGQRQLLKSIK 114
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+++
    KFK34438.1 115 RRSN 118
                   **86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.1E-3323116IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.8E-3623116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.2E-5423116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-192750IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.9E-3027116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.0E-197890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009644Biological Processresponse to high light intensity
GO:0032268Biological Processregulation of cellular protein metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MNPFLQKVDP PPPKPVQGLH EIGPAPFLTK TFELVDDPNT DHIVSWNREG TSFVVWDLNS  60
FSTILLPRHF KHSNFSSFIR QLNTYGFKKI DAERWEFANE GFLMGQRQLL KSIKRRSNFT  120
SSSLSINDPS CIELRREKQV LMMEIVSLRQ QQQTTKSYIR AMEQRIQGAE KKQRQMMSFL  180
ARAMQSPSFL HQLLKQRDKR IKELEGEAAK RIRGGSSMSE LEALAFEMQG YGKQRNMKEE  240
EEEEEEEEDQ IVIERELDDG FWEELLSNES LASTSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-222711629129Heat shock factor protein 1
5d5v_B2e-222711629129Heat shock factor protein 1
5d5v_D2e-222711629129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109115LKSIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK34438.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0497118e-59AL049711.3 Arabidopsis thaliana DNA chromosome 3, BAC clone F4F15.
GenBankCP0026868e-59CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013737123.11e-157heat stress transcription factor A-7a-like
SwissprotQ9SV121e-150HFA7A_ARATH; Heat stress transcription factor A-7a
TrEMBLA0A087GX360.0A0A087GX36_ARAAL; Uncharacterized protein
STRINGA0A087GX360.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51910.11e-151heat shock transcription factor A7A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]
  3. Nie S,Yue H,Xing D
    A Potential Role for Mitochondrial Produced Reactive Oxygen Species in Salicylic Acid-Mediated Plant Acquired Thermotolerance.
    Plant Physiol., 2016.
    [PMID:26099269]