PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK30396.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HD-ZIP
Protein Properties Length: 273aa    MW: 31421.6 Da    PI: 4.6936
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK30396.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.2e-1851104356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 k++++  +q+++Le+ Fe ++++  e++++LA++lgL+ rqV vWFqNrRa++k
  KFK30396.1  51 KKRRLRVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWK 104
                 45578899*********************************************9 PP
2HD-ZIP_I/II128.13.6e-4150141192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekkrrl  +qvk+LE++Fe e+kLeperK++la+eLglqprqvavWFqnrRAR+ktkqlEkdy +Lk++yd+l+++ ++L++++++L  e++
   KFK30396.1  50 EKKRRLRVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGVLKSQYDSLRHNFDSLRRDNDSLLLEIS 141
                  69************************************************************************************987776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.17E-1843108IPR009057Homeodomain-like
PROSITE profilePS5007116.81146106IPR001356Homeobox domain
SMARTSM003891.5E-1649110IPR001356Homeobox domain
CDDcd000863.30E-1551107No hitNo description
PfamPF000461.2E-1551104IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-1954113IPR009057Homeodomain-like
PRINTSPR000315.9E-67786IPR000047Helix-turn-helix motif
PROSITE patternPS00027081104IPR017970Homeobox, conserved site
PRINTSPR000315.9E-686102IPR000047Helix-turn-helix motif
PfamPF021831.0E-16106146IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MKRLSSSDSM CDEQSPRGYG SSFQSMFDGY EEDSNNINMM EEYSGMGLSE KKRRLRVDQV  60
KALEKNFELE NKLEPERKTK LAQELGLQPR QVAVWFQNRR ARWKTKQLEK DYGVLKSQYD  120
SLRHNFDSLR RDNDSLLLEI SKIKGKITGE EDKVTPESDN STVKEEEGFS LQEKLLPSSP  180
PQFLEHSTGF NYRRSFTDLR EVGSSDSCDS SGILNDETSS DNGRLKVITG GSFLQFVKTE  240
DHEEFLDGEE ACGFFSDEQP PSLHWYSTSD HWT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198106RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK30396.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3706201e-104AF370620.1 Arabidopsis thaliana homeodomain-like protein (T5J17.230) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472255.11e-154PREDICTED: homeobox-leucine zipper protein ATHB-16 isoform X2
SwissprotQ940J11e-152ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLA0A087GKJ40.0A0A087GKJ4_ARAAL; Uncharacterized protein
STRINGA0A087GKJ40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.11e-130homeobox protein 16
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]