PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KFK29059.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
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Family | C2H2 | ||||||||
Protein Properties | Length: 641aa MW: 71946.6 Da PI: 9.1349 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00027 | 116 | 137 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F ++ n++rH r+H KFK29059.1 116 KCEKCTREFCSPVNFRRHNRMH 137 7*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.097 | 115 | 142 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 117 | 137 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 641 aa Download sequence Send to blast |
MLFCLALSEF FSHFPFPVPS LSRIFSATFS PPQAASRIAL DPLRSVTVLL WNLMELVKQQ 60 DGNDSLDMLI RRAVGKDPFL SFPRPENSPV QLFQLLHTLE RPGWPLLTPL KIQMQKCEKC 120 TREFCSPVNF RRHNRMHRRL KKPEKDSGKE RDALGAFWNK LSVVEAKEIL SLKTMMLEEV 180 PGASVESGLV SLIERPGYTA LPQYYLRAGS ELLDIVQARP PRFPISSQEL FSILDDASEK 240 TFLSNEAAPI QKYIFDGETG KNVLDAKNVV ACTSFLLEQR LIKAWLADKD AEALRCQNLL 300 VEEEEAARRR QAELLERKKR KKLRQKEHRV KDQKKYAKED VSTTSDEQQY PAESSSPLSL 360 TSDSEAQRSD SIPIEDSSSL EDTQVLEMEN GINGEPQAPM VDGDDFGNSQ TLERRSGRRQ 420 MERSQQGMPN GFHANHAPKP GGMRKNGTSR DSRGNTTKVW TRKSDNPKLI SADAAVTQLD 480 QTKNSEVVIG SLSVTIGNSC ISGEHNQTKC GEEEVRSKTV EAKPGSEQTT AKIWRPVSSQ 540 GRKVSTPDEK KTNATAAEVV TAHHIGLQFN NHEAKAFLAK RWKEATSAEH VTLVLSQETE 600 IASNNKTHES SNGVISVRQK LRAKPEKGMK VKYVPKQRFP E |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 307 | 321 | RRRQAELLERKKRKK |
2 | 315 | 322 | ERKKRKKL |
3 | 317 | 321 | KKRKK |
4 | 320 | 330 | KKLRQKEHRVK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KFK29059.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006413290.1 | 0.0 | uncharacterized protein LOC18029908 | ||||
Refseq | XP_024004636.1 | 0.0 | uncharacterized protein LOC18029908 | ||||
TrEMBL | A0A087GGQ7 | 0.0 | A0A087GGQ7_ARAAL; Uncharacterized protein | ||||
STRING | A0A087GGQ7 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5680 | 25 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25610.1 | 0.0 | C2H2-like zinc finger protein |