PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK28353.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 492aa    MW: 52178.9 Da    PI: 8.7019
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK28353.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-055779123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C+k F r  nL+ H r H
  KFK28353.1 57 FVCEICNKGFQRDQNLQLHRRGH 79
                89*******************88 PP
2zf-C2H211.90.00069133155123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC++C+k +  +s+ k H + +
  KFK28353.1 133 WKCEKCSKKYAVQSDWKAHSKIC 155
                 58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-55679IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.37E-65679No hitNo description
PROSITE profilePS5015710.9495779IPR007087Zinc finger, C2H2
PfamPF121717.8E-55779IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0175779IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
SMARTSM003558798128IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.3E-4121154IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.37E-6128153No hitNo description
SMARTSM00355140133153IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MPVDLDNSST VSGDVSVSST GNQNPPPKKK RNLPGMPDPE AEVIALSPKT LMATNRFVCE  60
ICNKGFQRDQ NLQLHRRGHN LPWKLRQRSS KEVRKKVYVC PVSGCVHHEP SRALGDLTGI  120
KKHFCRKHGE KKWKCEKCSK KYAVQSDWKA HSKICGTKEY KCDCGTLFSR RDSFITHRAF  180
CDALAEESAK NHTQSKKLYP ERKKNTEPDQ KSPSPSQPQQ EQPQSPASVA VAPAPAISAE  240
TEQTKMTTSS VLPIQSSPES MENTPPEVII EEVPRTIGFN MSSSGLSNDH NNNNGGYAGL  300
FVSSTASPSL YASSTASPSL FAPSSSIEPI SLCLSTNPSL FGQTMQEPPH FLTPLPPQPA  360
MSATALLQKA AQMGSTGSGG SLLRGLGIVS TTSSSMELSN HDAMSLAPGL GLGLPCNSGG  420
SGSGLKELMM GNSSVFGPKQ TTLDFLGLGR AVGNGGNPGG GGLSALLTSI GGGGIDLFGS  480
EEYSGKDIGR SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-35129190364Zinc finger protein JACKDAW
5b3h_F4e-35129190364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18395KLRQRSSKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK28353.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0998590.0AY099859.1 Arabidopsis thaliana zinc finger protein (At5g66730) mRNA, complete cds.
GenBankBT0003100.0BT000310.1 Arabidopsis thaliana zinc finger protein (At5g66730) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280348.10.0protein indeterminate-domain 1
SwissprotQ9LVQ70.0IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A087GEQ10.0A0A087GEQ1_ARAAL; Uncharacterized protein
STRINGA0A087GEQ10.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.10.0C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]