PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK27859.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 374aa    MW: 41544.2 Da    PI: 9.2582
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK27859.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.13.7e-141495194
                EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
          B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                ffk l     +k++ +++p  f +++ +gk+e++    + d s  +W+v++  ++ +    lt GW++F+ a++L++gD++ F++dg+    l++
  KFK27859.1 14 FFKPL--LPGFKTH-ITIPEAFYSKYlEGKEEGNAATLISDASDITWKVTV--DGLR----LTHGWEKFALAHDLRVGDILAFRHDGN----LMF 95
                77777..7788888.9**********988888877777788**********..6666....***********************8774....333 PP
2B348.51.6e-15144233697
                 ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                 +++++l+++ + l+k f+++ g++k ++ +++l  e+grs ++ l y ++s+r+ +++GW+ F++ ng k+g f+ F+l++ +++++v+++f
  KFK27859.1 144 VTASNLRTDSVNLSKGFTTSSGLSKLCN-EIILVGETGRSSTIGLVYHNSSNRFCFRGGWRAFCRTNGHKAGGFLRFTLVS-NGKTPVLRIF 233
                 6788999999*************99775.**************************************************98.6777999988 PP
3B355.51e-17275362493
                 E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 v ++ ++lk++ l lp +  + + ++k + +++ l++++gr+W+++l+ r+ s+r+++t GW +F+++ng k+g +++Fkl+++ +++lv
  KFK27859.1 275 VSVTVNNLKEDKLFLPSRVSRPNIKNK-GLQKIDLMNKQGRTWTLTLKNRRLSDRFFITHGWTSFCEENGQKAGCSFTFKLVRH-GTNLV 362
                 567889999**********99995555.5569***************99*******************************9984.43333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.16E-187105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.3E-188103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.39211103IPR003340B3 DNA binding domain
CDDcd100175.78E-1512100No hitNo description
SMARTSM010195.9E-1614103IPR003340B3 DNA binding domain
PfamPF023624.2E-101596IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-15133231IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-16135231IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.5E-17139236IPR003340B3 DNA binding domain
PROSITE profilePS5086310.292139236IPR003340B3 DNA binding domain
CDDcd100171.40E-14139234No hitNo description
PfamPF023621.9E-13144233IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-17268365IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-15271364IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.902272368IPR003340B3 DNA binding domain
SMARTSM010196.6E-20273367IPR003340B3 DNA binding domain
PfamPF023623.4E-16274362IPR003340B3 DNA binding domain
CDDcd100174.72E-13280364No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MATTLFSSPA NPNFFKPLLP GFKTHITIPE AFYSKYLEGK EEGNAATLIS DASDITWKVT  60
VDGLRLTHGW EKFALAHDLR VGDILAFRHD GNLMFHVTPF GPGSCEILYS HDNDQNHAGE  120
LAGSSKAKKQ NPIEDETCIV VVPVTASNLR TDSVNLSKGF TTSSGLSKLC NEIILVGETG  180
RSSTIGLVYH NSSNRFCFRG GWRAFCRTNG HKAGGFLRFT LVSNGKTPVL RIFPLERTVD  240
STRDHVSAEV KSLEPAKEKK NVESLSLSDD SSFVVSVTVN NLKEDKLFLP SRVSRPNIKN  300
KGLQKIDLMN KQGRTWTLTL KNRRLSDRFF ITHGWTSFCE ENGQKAGCSF TFKLVRHGTN  360
LVLLMNETLR EEGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK27859.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405883.21e-139B3 domain-containing protein REM-like 3
SwissprotF4KFT61e-121REML3_ARATH; B3 domain-containing protein REM-like 3
TrEMBLA0A087GDA70.0A0A087GDA7_ARAAL; Uncharacterized protein
STRINGA0A087GDA70.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17423910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G32460.11e-112B3 family protein