PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK27548.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 278aa    MW: 31464.4 Da    PI: 4.3907
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK27548.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.31.1e-12251041193
                 HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                  + + l lp +   ++ ++k+ ++t+t+   sg+ W++ l  rk+s   yvl +GWk+ vk+  L  g+f+ F++dg ++f+++
  KFK27548.1  25 ESGDDLELPASLN-SY-LPKHLPRTVTVSCISGKNWTLAL--RKCSVDkYVLVNGWKRIVKDECLTGGEFIEFEFDGFKCFNFC 104
                 4555567776654.56.5678999****************..9999888*************************9987888443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-159107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-1610107IPR015300DNA-binding pseudobarrel domain
CDDcd100175.47E-1115106No hitNo description
PROSITE profilePS5086310.8715109IPR003340B3 DNA binding domain
SMARTSM010192.4E-1017109IPR003340B3 DNA binding domain
PfamPF023625.3E-1018105IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-10175272IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-8177272IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.15180275IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MTTMKRGESS DDCLPKFFKV YLPGESGDDL ELPASLNSYL PKHLPRTVTV SCISGKNWTL  60
ALRKCSVDKY VLVNGWKRIV KDECLTGGEF IEFEFDGFKC FNFCIYEGDT MCKRLGRNSV  120
DSEEIKEESD DDVIVIDSDD DVDYDIADDI EYVEDDDDDD DEAVDDDDVR QYLDDCNNPF  180
FTMKLNPKKK SQLHIPSQVI RDYGLNFSES ITVVDPLAKK FGTLENAIKI QVNGSVFVKK  240
FGSVIRRNNV KLTDKLVCEL KKTGNSPVHT IKVSIING
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-1271121104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK27548.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010455999.11e-106PREDICTED: B3 domain-containing protein At5g60130-like
SwissprotQ9LVG11e-101Y5013_ARATH; B3 domain-containing protein At5g60130
TrEMBLA0A087GCE60.0A0A087GCE6_ARAAL; Uncharacterized protein
STRINGA0A087GCE60.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60130.12e-41B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]