PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK27547.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 388aa    MW: 44679 Da    PI: 3.8089
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK27547.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.91e-1411100193
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 ffkv +p d++    l +p +f  ++ ++k  +kt+++++  g+ W+++l+   +  +r+v+ +GWk+ vk+ +Lk g+f+ F++dg++ f+++
  KFK27547.1  11 FFKVYLPDDSGD--DLDIPISFN-SC-LPKSMPKTVIVRSIYGKIWKLELRKcYGDVERFVMVNGWKSIVKDEDLKGGEFLAFEFDGSRFFNFC 100
                 788886666554..59******7.66.4567899****************554444555*************************9996666443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-195107IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-166105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.2949105IPR003340B3 DNA binding domain
CDDcd100171.15E-149102No hitNo description
PfamPF023622.9E-1211100IPR003340B3 DNA binding domain
SMARTSM010199.5E-1511105IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-5294382IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MSKGDDSLPK FFKVYLPDDS GDDLDIPISF NSCLPKSMPK TVIVRSIYGK IWKLELRKCY  60
GDVERFVMVN GWKSIVKDED LKGGEFLAFE FDGSRFFNFC IYGQRTCKRL ASLVQDKEVK  120
DESDGEDGRS SDDTIVLDEE DDDDDDDDQD YGDEGKCSED IIVLDDDEDE DEDEDEDEDD  180
DDGDGDDGED DDDDDDDDDQ DYGEEDKSNK DIIVLDDDDD DDDDDDDQDY GDKEKSSEDV  240
IVLDDDDNED DDDDYADDEN ERVRVETERK EKGSSGDYID GEDNRQYLDN EMNPFFIVNQ  300
NLQRKVDARI PAKVINDYGL RFPEFIYLID PLEKIFGKLK RKVEGRMIKA FDSITRRNQV  360
KSSDKMICEL LRETNGLVCK IKVHVIRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A4e-1121072104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK27547.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282242.21e-122B3 domain-containing protein At5g60142
SwissprotQ9LST31e-116Y5142_ARATH; B3 domain-containing protein At5g60142
TrEMBLA0A087GCE50.0A0A087GCE5_ARAAL; Uncharacterized protein
STRINGA0A087GCE50.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60142.12e-57B3 family protein