PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK27201.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 478aa    MW: 53283.1 Da    PI: 5.2339
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK27201.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0017114134323
                 ETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                 C  C+k F++   L  H+r H
  KFK27201.1 114 CCVCHKKFTSMKALYGHMRFH 134
                 *******************99 PP
2zf-C2H2110.0014325347123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C  C+ksF++   L  H  +H
  KFK27201.1 325 HVCVTCNKSFTSYQALGGHRASH 347
                 79**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.1E-45983IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.99E-859134No hitNo description
PfamPF139124.9E-86184IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.996188IPR007087Zinc finger, C2H2
SMARTSM003550.286183IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
PROSITE profilePS501578.974112134IPR007087Zinc finger, C2H2
SMARTSM003551.4112134IPR015880Zinc finger, C2H2-like
PfamPF139120.0062114135IPR007087Zinc finger, C2H2
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
SuperFamilySSF576675.95E-6324347No hitNo description
PfamPF139124.3E-10325349IPR007087Zinc finger, C2H2
SMARTSM003550.37325347IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.556325352IPR007087Zinc finger, C2H2
PROSITE patternPS000280327347IPR007087Zinc finger, C2H2
SuperFamilySSF576675.95E-6390417No hitNo description
PROSITE profilePS501578.974395417IPR007087Zinc finger, C2H2
PfamPF139122.6E-13395419IPR007087Zinc finger, C2H2
SMARTSM003550.23395417IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280397417IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MEQFPGYKTN CGFSLGKPRL ESINVKIPKI QAEKEEEAKE EEEHHGVMSM DLEEGEEDKK  60
HICCECGKEF RSGKALGGHK RIHMVETRKF SMMRPKMVSG VVSRSEKGEI EVACCVCHKK  120
FTSMKALYGH MRFHPDRGWK GVNPPQLGTS SSSTLSNDDH DDELLSSDYD DDDDNDDDDD  180
DENSELWDNN WDMENVLDLK DSIRGWSVKG KRGRTSVDHL KVDPPQEDMR NVDMEVDPPQ  240
EDMKSVDMKV DESEQPQEDM KNEANDLLFF ANRAEATNLK KKRNKKKKKS LSEMEKESSS  300
THQLDHQVVV VAAADQEGVG AREKHVCVTC NKSFTSYQAL GGHRASHNKV KILENHQAAR  360
ANVEALLLGT EATTIGLASA QGSNTSLSSS NNGDHICNIC HKSFPTGQAL GGHKRCHWSG  420
PVPTDAATAV PTASTAAPTA SSSQVTETVQ EVKKLKRTFL DFDLNELPPN EEEQEERV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278285LKKKRNKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK27201.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0230291e-151AB023029.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K24C1.
GenBankAB4937941e-151AB493794.1 Arabidopsis thaliana At5g56200 gene for hypothetical protein, partial cds, clone: RAAt5g56200.
GenBankCP0026881e-151CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280373.10.0zinc finger protein ZAT4
TrEMBLA0A087GBE90.0A0A087GBE9_ARAAL; Uncharacterized protein
STRINGA0A087GBE90.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-136C2H2 family protein