PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK23380.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

C2H2

Protein Properties

Length: 300aa MW: 34159.5 Da PI: 8.2164

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK23380.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.9	8.5e-06	142	161	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C k+F+r nL+ H+ KFK23380.1 142 FSCHVCFKTFNRYNNLQMHM 161 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.99E-5	124	164	No hit	No description
PROSITE profile	PS50157	10.055	142	169	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.5E-4	142	161	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	144	164	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.24E-5	211	246	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009813	Biological Process	flavonoid biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MESPQYEISS SSSSEKPRDY FRSLNLISNL TKNPSHNNTL VEPLPLIDRI NLNQNPNLNL 60 NPKPSYVEEE EEEEEEDVDV DVSLRIGLPG SGNSSNDDKQ PRKKNGKEIV TYDAVKEIEN 120 EVSGKAYWIP AAEQILIGFT HFSCHVCFKT FNRYNNLQMH MWGHGSQYRK GPESLKGTQP 180 RAMLGIPCYC CVEGCRNHID HPRSKPLKDF RTLQTHYKRK HGHKPYACRI CGKLLAVKGD 240 WRTHEKNCGK RWVCVCGSDF KHKRSLKDHV KAFGPGHGPY PTGLLDEQAS NSSVSETLFF

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269\|PubMed:11782451, ECO:0000269\|PubMed:21477081}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK23380.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_174737.2	1e-176	C2H2 and C2HC zinc fingers superfamily protein
Refseq	XP_010478920.1	1e-176	PREDICTED: protein TRANSPARENT TESTA 1-like
Swissprot	Q8VWG3	1e-177	TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBL	A0A087G0H8	0.0	A0A087G0H8_ARAAL; Uncharacterized protein
STRING	A0A087G0H8	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	1e-166	C2H2 family protein

Publications ? help Back to Top
Lian J, et al. Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus. Plant Sci., 2017. 254: p. 32-47 [PMID:27964783]