PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4U30965.10

Common Name

JCGZ_21405, LOC105649506

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Dof

Protein Properties

Length: 283aa MW: 31234.6 Da PI: 8.7295

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4U30965.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	114.6	4.1e-36	49	104	4	59
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 + lkcprCdstntkfCyynny+ sqPr+fCk+C+r+WtkGG+lrnvPvGggr++++ Jcr4U30965.10 49 EPLKCPRCDSTNTKFCYYNNYNKSQPRHFCKTCKRHWTKGGTLRNVPVGGGRKNKR 104 679***********************************************976665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-22	48	104	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-31	50	103	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.521	51	105	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	53	89	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MGLSSKQVIS SNGLDWSQTL LEELPKPPIL RRQTQQNQQN NSSSSSFTEP LKCPRCDSTN 60 TKFCYYNNYN KSQPRHFCKT CKRHWTKGGT LRNVPVGGGR KNKRLKTSKS AAKSSAATTT 120 TSTSNGNIIN RVNPHMVIQA QQLKQNLPLA FGDQKVFCPT SSVLQQDSIS CSNNGVFLSS 180 ALSLPQDHGL QFPYSSSSCF GTNPSSISTS FQSSILYNNY TGGEQAVEDS TVTTVIPATG 240 SSSTTHNQLW QVPNASYWNW EDIDNFVPTD LNMPWDDDSE LKP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012091561.1	0.0	dof zinc finger protein DOF1.4
TrEMBL	A0A067JN36	0.0	A0A067JN36_JATCU; Uncharacterized protein
STRING	cassava4.1_034118m	1e-126	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5107	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	5e-29	DOF zinc finger protein 1

Link Out ? help Back to Top
Entrez Gene	105649506

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]