PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S26061.10 | ||||||||
Common Name | JCGZ_11077, LOC105637222 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | C2H2 | ||||||||
Protein Properties | Length: 409aa MW: 44760.2 Da PI: 5.8925 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.7 | 0.0017 | 137 | 158 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C Cg++F + ++L H+r H Jcr4S26061.10 137 TCCLCGEVFDSYHSLFGHMRFH 158 6*******************99 PP | |||||||
2 | zf-C2H2 | 11.8 | 0.00072 | 324 | 346 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C k++++ L H r+H Jcr4S26061.10 324 FQCDICEKTYPTGQALGGHKRSH 346 89******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.9E-5 | 59 | 83 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 7.6 | 59 | 81 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 61 | 81 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.746 | 136 | 163 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.6 | 136 | 158 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 9.8E-8 | 137 | 158 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 138 | 158 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 0.0027 | 138 | 159 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.8E-8 | 319 | 346 | No hit | No description |
Pfam | PF13912 | 1.4E-12 | 324 | 348 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.39 | 324 | 346 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.076 | 324 | 346 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 326 | 346 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 409 aa Download sequence Send to blast |
MDNSSNHNPP MEDSSSKNKL CIKIKMPTTA AATTEAQGDG GSGGGDDFQQ LKPGQLGYRV 60 CEFCGKKFDN GKAWGGHKRH HLKILKNNSK RNQEVKTNIQ KHKNDGGVVE DGGSKIVGRC 120 NVIKAGDVRM SSDGKPTCCL CGEVFDSYHS LFGHMRFHPD RDWKGINRPS SSSGIDQIYS 180 ASVSTAKENS DNSIDLLSSL SGWSRRDKRG RSCLSDLIPQ AAQSLLTLAR DITTQESAGH 240 QQEGSGSATK SFRRVLESDK KLGFDSNQNY GLLVNHKNKK MKLENEEVDG NDGVVADEIP 300 ESEAEEEEED DDDDQVRSPM ENIFQCDICE KTYPTGQALG GHKRSHWKAP AKGLPNEDAN 360 HSSASNFAFN TPSSCGKPEG IQATHGMLNI DLNKPYVMQE DGEESFSDD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012076027.1 | 0.0 | zinc finger protein ZAT9 | ||||
TrEMBL | A0A067KEH3 | 0.0 | A0A067KEH3_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_022792m | 1e-77 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9737 | 24 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26940.1 | 7e-17 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105637222 |
Publications ? help Back to Top | |||
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