PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S14260.10 | ||||||||
Common Name | JCGZ_22420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | C3H | ||||||||
Protein Properties | Length: 144aa MW: 16152.5 Da PI: 4.467 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.6 | 1.4e-10 | 65 | 88 | 1 | 24 |
--S---SGGGGTS--TTTTT-SS- CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFa 24 y +C+++ +tG+C yGd+CkF+ Jcr4S14260.10 65 YQPDICKDYKETGYCGYGDSCKFM 88 67789******************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 1.96E-8 | 62 | 96 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.003 | 64 | 91 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.76 | 64 | 92 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-8 | 65 | 88 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-10 | 65 | 95 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MADSGESQQP APVSGNEKLY KGIHGYTDHK AGFRREQTIS SEKAGGSHGP LRASAHIRVS 60 ARFDYQPDIC KDYKETGYCG YGDSCKFMYD RGDYKPGWQL EKEWEEAEKI RKRNLALGED 120 EDGLGESDDN EDDDDSLSFA ESLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5z56_M | 4e-27 | 16 | 131 | 149 | 257 | RING finger protein 113A |
5z58_M | 4e-27 | 16 | 131 | 149 | 257 | RING finger protein 113A |
6ff4_t | 4e-27 | 16 | 131 | 149 | 257 | RING finger protein 113A |
6ff7_t | 4e-27 | 16 | 131 | 149 | 257 | RING finger protein 113A |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012065710.1 | 5e-78 | zinc finger CCCH domain-containing protein 1 | ||||
Refseq | XP_012065716.1 | 5e-78 | zinc finger CCCH domain-containing protein 1 | ||||
Refseq | XP_020532881.1 | 5e-78 | zinc finger CCCH domain-containing protein 1 | ||||
Swissprot | Q8GX84 | 9e-70 | C3H1_ARATH; Zinc finger CCCH domain-containing protein 1 | ||||
TrEMBL | A0A067L9A6 | 1e-102 | A0A067L9A6_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_011914m | 3e-74 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7082 | 33 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01350.1 | 4e-70 | C3H family protein |
Publications ? help Back to Top | |||
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