PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S14128.10

Common Name

JCGZ_14878

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

NAC

Protein Properties

Length: 327aa MW: 36612.8 Da PI: 5.3241

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S14128.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	157.3	6.6e-49	17	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 + pGfrF+Ptd el+++yLkkk+eg + + evi+ev+i+++ePwdLp k+v ++e+ew+fFs r +ky++g++++rat+ gyWkatgk+++v+s Jcr4S14128.10 17 MFPGFRFSPTDVELISYYLKKKMEGADKCV-EVISEVEICRYEPWDLPgKSVIKSENEWFFFSARGRKYPNGSQSRRATELGYWKATGKERNVKS- 110 579**********************777.99***********777777899**********************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++++g+k+tLvf+ grapkge+t+W+mhey + Jcr4S14128.10 111 GSNVIGTKRTLVFHIGRAPKGERTEWIMHEYCM 143 99***************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.89E-55	6	158	IPR003441	NAC domain
PROSITE profile	PS51005	52.239	17	159	IPR003441	NAC domain
Pfam	PF02365	1.0E-24	19	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009626	Biological Process	plant-type hypersensitive response
GO:0009910	Biological Process	negative regulation of flower development
GO:0034976	Biological Process	response to endoplasmic reticulum stress
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005783	Cellular Component	endoplasmic reticulum
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MAGVSKETQM SIEASSMFPG FRFSPTDVEL ISYYLKKKME GADKCVEVIS EVEICRYEPW 60 DLPGKSVIKS ENEWFFFSAR GRKYPNGSQS RRATELGYWK ATGKERNVKS GSNVIGTKRT 120 LVFHIGRAPK GERTEWIMHE YCMHGKSQDS LVVCRLRRNI DFRPNDSSNR TSLNMRHLSI 180 SEAGTDRPGT SEGEKAAESS RKYSSSHDSH SVEQFDSASE SEQKHSSETL LAESSSQQPE 240 DSVNEEEFYA DILNDDIVNL DETPLTAIPE LLPTLANKPE VQTQAQQQPM ELVVSGAPPL 300 QSIPIQGTAN RRIKLTQIPE ASEGNIN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-42	16	158	19	167	NAC domain-containing protein 19
3swm_B	1e-42	16	158	19	167	NAC domain-containing protein 19
3swm_C	1e-42	16	158	19	167	NAC domain-containing protein 19
3swm_D	1e-42	16	158	19	167	NAC domain-containing protein 19
3swp_A	1e-42	16	158	19	167	NAC domain-containing protein 19
3swp_B	1e-42	16	158	19	167	NAC domain-containing protein 19
3swp_C	1e-42	16	158	19	167	NAC domain-containing protein 19
3swp_D	1e-42	16	158	19	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in plant cell division. {ECO:0000269\|PubMed:16803883}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF022014	0.0	KF022014.1 Jatropha curcas no apical meristem (NAM) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012078968.1	0.0	NAC domain-containing protein 89
Swissprot	Q94F58	2e-98	NAC89_ARATH; NAC domain-containing protein 89
TrEMBL	R4NEV6	0.0	R4NEV6_JATCU; NAC transcription factor 050
STRING	cassava4.1_032848m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7315	33	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22290.1	1e-100	NAC domain containing protein 89

Link Out ? help Back to Top
Entrez Gene	105639501

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Wu Z, et al. Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.). PLoS ONE, 2015. 10(6): p. e0131890 [PMID:26125188]