PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S11106.10
Common NameJCGZ_10504, LOC105636150
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB_related
Protein Properties Length: 506aa    MW: 56007.9 Da    PI: 8.3853
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S11106.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.5e-1670114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r rWT++E++++++a k++G   W++I +++g ++t+ q++s+ qk+
    Jcr4S11106.10  70 RERWTEDEHKKFLEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 114
                      78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.29E-1664118IPR009057Homeodomain-like
PROSITE profilePS5129420.88565119IPR017930Myb domain
TIGRFAMsTIGR015575.1E-1768117IPR006447Myb domain, plants
SMARTSM007177.1E-1369117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-970110IPR009057Homeodomain-like
PfamPF002491.5E-1370113IPR001005SANT/Myb domain
CDDcd001675.83E-1072115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MVGGLVVSAA MAVQDQCGGT RSNTVLPAGN GISLNAGLHN LTGAQIKEQF TCGNEYCPKV  60
RKPYTITKQR ERWTEDEHKK FLEALKLYGR AWRRIEEHVG TKTAVQIRSH AQKFFSKVVR  120
EASGSNTASV EPIEIPPPRP KRKPVHPYPR KMMHPVNKET SVPEQPLRSL SPNFSISEQE  180
NQSPTSVLSV VGSDALGSND SNIPNRSVSP VSFASGSHAN DFSTCEPNLT PEDDGSPSPA  240
PPTAVALDDQ SPKIGIAFSE RYKNSTCFPK KMSFPKKRLV AETSTRSLKL FGRTVLVTGC  300
HTPSSPTTGN SKLLQSDENE VKPVQPLSWN FMATELQSGN RDCTWNHLPH GPPGALYYLP  360
LQKENPNSVE AGSTLPWWAF CGGMPFPIVP FHKQEPAKIH LESNGEEIQD KEIQKEGSWT  420
GSNSGSVNDG ENVDKNPDWE TQSRQLPREE KEPYPVLELK PSEKLVSSSR SMRGFVPYKK  480
RIAERDSQSS TITGEEREEQ RIRLSL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012074728.10.0protein REVEILLE 1 isoform X1
TrEMBLA0A067KI220.0A0A067KI22_JATCU; Uncharacterized protein
STRINGcassava4.1_006216m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29563372
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.12e-71MYB_related family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]