PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S09419.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | C2H2 | ||||||||
Protein Properties | Length: 124aa MW: 14493.2 Da PI: 10.1741 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.1 | 0.00058 | 20 | 42 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C +Cg + s ks+ ++H+ H Jcr4S09419.20 20 YFCDYCGICRSKKSLITSHMEIH 42 78******************995 PP | |||||||
2 | zf-C2H2 | 23.6 | 1.3e-07 | 69 | 90 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg sF+ + +Lk+H+++H Jcr4S09419.20 69 TCEECGASFKKPTYLKQHMQSH 90 6*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.63E-9 | 18 | 90 | No hit | No description |
SMART | SM00355 | 14 | 20 | 42 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 0.0032 | 68 | 90 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.803 | 68 | 91 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF00096 | 2.9E-5 | 69 | 90 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.6E-6 | 69 | 91 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 70 | 90 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MEESMENERP RPLSRDIRRY FCDYCGICRS KKSLITSHME IHHKIIGDRR RWRRKKIKMK 60 KLEGIKSNTC EECGASFKKP TYLKQHMQSH STVVGIMAVK LFSLLVLLCV DCTALAVDRL 120 FTVS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 48 | 61 | RRRWRRKKIKMKKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012066810.1 | 2e-43 | transcription factor IIIA | ||||
Swissprot | Q84MZ4 | 4e-17 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | A0A2C9WI28 | 5e-35 | A0A2C9WI28_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_010279m | 9e-36 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3069 | 33 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.2 | 1e-17 | transcription factor IIIA |