PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S08160.10
Common NameJCGZ_19869, LOC105644087
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 360aa    MW: 41031.3 Da    PI: 8.1979
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S08160.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM182.79.2e-57161421129
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                    lppGfrFhPtdeel+++yL +kv ++ +++ ++i evd++k+ePwdLp +vk +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkd+e+++ +
  Jcr4S08160.10  16 LPPGFRFHPTDEELITHYLSQKVIDNCFSA-RAIGEVDLNKCEPWDLPWRVKMGEKEWYFFCVRDRKYPTGLRTNRATDAGYWKATGKDREIYK-G 109
                    79*************************999.89***************99999****************************************9.9 PP

            NAM  97 gelvglkktLvfykgrapkgektdWvmheyrle 129
                    ++lvg+kktLvfykgrapkg+kt+Wvmheyrle
  Jcr4S08160.10 110 KTLVGMKKTLVFYKGRAPKGSKTNWVMHEYRLE 142
                    99*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-6412166IPR003441NAC domain
PROSITE profilePS5100559.71116166IPR003441NAC domain
PfamPF023651.1E-2917141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MENNSMVSRD DEEMELPPGF RFHPTDEELI THYLSQKVID NCFSARAIGE VDLNKCEPWD  60
LPWRVKMGEK EWYFFCVRDR KYPTGLRTNR ATDAGYWKAT GKDREIYKGK TLVGMKKTLV  120
FYKGRAPKGS KTNWVMHEYR LEGKSSVYNI PKTAKNEWVI CRVFQKNSGG KKTHIPGLVR  180
LSSYGNELRP TLLPPLMDSS SPHQSETGNN GGNTSHVTCF SKFMEVQKPR EYTFADNFNK  240
NSSSILASSS PPNISPVSAL FSKSSVPNYS YFSQISPNFA NLHYPDSVLM QEQSILKMLL  300
ENQGPNMRHN SKMEISQDTG HSPDMSSVVI NPEMIHRSFE DQEAPSSSVG QVDLDYLWSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-551317214171NO APICAL MERISTEM PROTEIN
1ut4_B9e-551317214171NO APICAL MERISTEM PROTEIN
1ut7_A9e-551317214171NO APICAL MERISTEM PROTEIN
1ut7_B9e-551317214171NO APICAL MERISTEM PROTEIN
3swm_A1e-541317217174NAC domain-containing protein 19
3swm_B1e-541317217174NAC domain-containing protein 19
3swm_C1e-541317217174NAC domain-containing protein 19
3swm_D1e-541317217174NAC domain-containing protein 19
3swp_A1e-541317217174NAC domain-containing protein 19
3swp_B1e-541317217174NAC domain-containing protein 19
3swp_C1e-541317217174NAC domain-containing protein 19
3swp_D1e-541317217174NAC domain-containing protein 19
4dul_A9e-551317214171NAC domain-containing protein 19
4dul_B9e-551317214171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7752790.0KC775279.1 Jatropha curcas NAC transcription factor 001 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012084730.10.0NAC domain-containing protein 100
SwissprotQ9FLJ21e-133NC100_ARATH; NAC domain-containing protein 100
TrEMBLR4N5I40.0R4N5I4_JATCU; NAC transcription factor 001
STRINGcassava4.1_010869m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-131NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Wu Z, et al.
    Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.).
    PLoS ONE, 2015. 10(6): p. e0131890
    [PMID:26125188]