PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S05251.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | LBD | ||||||||
Protein Properties | Length: 135aa MW: 14351 Da PI: 7.8497 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 49.8 | 9.9e-16 | 84 | 131 | 1 | 47 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllk 47 +CaaCk+lrr+C+++C la yfp + p k++++ +FG+sn +k+l+ Jcr4S05251.10 84 PCAACKILRRRCTDKCYLASYFPPTTePDKLNIIDSVFGVSNTVKILQ 131 7*********************775549*****************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 14.094 | 83 | 135 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-14 | 84 | 131 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MGNNPFLFAP TDSYSQPSLP SSSSSQSPLQ SPSPSSNSCS SRPSSDSSPS LNSPLQPSQQ 60 SLPQLPSHTS SSHFDPPSAA VVGPCAACKI LRRRCTDKCY LASYFPPTTE PDKLNIIDSV 120 FGVSNTVKIL QVFMI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012073872.1 | 1e-51 | LOB domain-containing protein 1-like | ||||
TrEMBL | A0A067LMX1 | 7e-40 | A0A067LMX1_JATCU; Uncharacterized protein | ||||
STRING | VIT_13s0019g03700.t01 | 9e-17 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 2e-17 | LOB domain-containing protein 11 |