PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S04199.10 | ||||||||
Common Name | JCGZ_04578 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 187aa MW: 21483.5 Da PI: 9.1553 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.9 | 1.7e-20 | 2 | 48 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 krien+ r +tfskRr gi KKA+EL +LC+aeva+++fs+ gk + Jcr4S04199.10 2 KRIENEDDRLITFSKRRSGIYKKASELVTLCGAEVALLVFSPAGKPF 48 79*****************************************9855 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 6.41E-24 | 1 | 70 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 22.862 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.4E-22 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.7E-24 | 3 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-10 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-10 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MKRIENEDDR LITFSKRRSG IYKKASELVT LCGAEVALLV FSPAGKPFSF GHPSLESVVR 60 RFLGKSSSND NTHPLVEAHR RMRINELNLQ HNEVLSQLEA DKQRGNMLKM MVKGKTRQGW 120 WDTPIDELNL QELQQMHAKL EELHSNLCKS VSAVSFRINN PLFASDIASE KESFSFLHGH 180 GYEHRYF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012072479.1 | 1e-139 | agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A067L0B4 | 1e-137 | A0A067L0B4_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_025366m | 3e-78 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 3e-41 | AGAMOUS-like 61 |
Publications ? help Back to Top | |||
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