PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S04081.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | ERF | ||||||||
Protein Properties | Length: 159aa MW: 18661.1 Da PI: 10.2794 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.8 | 4.8e-12 | 36 | 77 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k+ +W A I++ +k+++lg+ g+ eeAa+++++a+ Jcr4S04081.20 36 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 77 79**98..47*********4.....5********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.3E-4 | 35 | 92 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.8E-6 | 35 | 78 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-8 | 36 | 80 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-6 | 38 | 82 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MQQYFFKQVL DVVLQPVKRR KRHRRKHVQN QEQCLMRGVY FKNMKWQAAI KVDKKQIHLG 60 TVGSQEEAAR LYDRAAFMCG REPNFELSEE EKQELRKFKW DEFLAITRSA INNKKHKRRN 120 GASLPKKSEA TLQNGDWDDK QGVNSFSASE DVEPDSSTS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012085059.1 | 1e-105 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_020539077.1 | 1e-105 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_020539078.1 | 1e-105 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_020539079.1 | 1e-105 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
Swissprot | Q56XP9 | 2e-47 | ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040 | ||||
TrEMBL | A0A067K3H4 | 1e-103 | A0A067K3H4_JATCU; Uncharacterized protein | ||||
STRING | POPTR_0002s24750.4 | 9e-85 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5457 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.1 | 1e-49 | ERF family protein |