PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S03795.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB_related | ||||||||
Protein Properties | Length: 627aa MW: 71686.4 Da PI: 8.3182 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.1 | 3.6e-07 | 418 | 459 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE e + ++++G++ Wkt a+ +g + + ++k+ w+ Jcr4S03795.20 418 KRKWTPEEVEFVQKFHEKYGSD-WKTMAEILG--KHRFHVKDTWR 459 579*******************.***999998..66777887776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.213 | 413 | 462 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.009 | 417 | 464 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.94E-8 | 418 | 479 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.1E-7 | 420 | 473 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 1.4E-10 | 421 | 479 | No hit | No description |
PROSITE profile | PS50090 | 7.933 | 463 | 532 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.019 | 467 | 534 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.36E-6 | 470 | 588 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.6E-8 | 474 | 532 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.748 | 534 | 587 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 627 aa Download sequence Send to blast |
MCIVLLHLLV AANDFREGLA VTSQKVRGKF FAYMGTKSVG KKGHEKEKKN NAEEGFCNED 60 KKNKVKDFGV NDNDFEPSDT EIETVNIEGG LNNQEIENKK RQHKDRKSGQ GSANVESQVM 120 EKMDDRHRIS NSENVSEMIN GKEVDQRKTK IKKQKKHKDV VHGHVIKSAT DRKEVENGRD 180 HVYVEDPRKE RKKKKGQHNV NLDSRSTKIT AETVNDESNR IIEDVSSIDL AENQVGDGKV 240 GAHARKAADG KDKKKRKRED IGSVGLINED VGSKSKCLDE NILKKVNHSG KERKKKKKHD 300 GMEGKDGDRE QKMGGGVEDT NSSQKSTPNT AKRVSFSENV EVFPSSDGPS DEETQKDKLV 360 QGKRFSPEED EMVKVAVLNY IDSHGLGEEG NRSGLTLETS FXXXXXXXXX XXXXXXXKRK 420 WTPEEVEFVQ KFHEKYGSDW KTMAEILGKH RFHVKDTWRR IKLKNRKEGR WSQEEYQNLF 480 DLVNKDLRLK ALEEVKKSKH GMLRDNISWT AISDQLGTRT TPTCCLKWYN QLTSPMVAQG 540 EWLDVDDYNL VIALYDLDAC CMEDVDWDSL LEHRSGDLCR KRWSQMVKHI GEHGNKSFAD 600 QVEVLMQRYC PDVLEAREAH NSKPTVT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 145 | 152 | QRKTKIKK |
2 | 291 | 297 | ERKKKKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012064753.1 | 0.0 | RNA polymerase I termination factor | ||||
TrEMBL | A0A067L9S7 | 0.0 | A0A067L9S7_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_002606m | 1e-163 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6704 | 19 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41020.1 | 1e-103 | MYB_related family protein |