PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S03734.10

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

G2-like

Protein Properties

Length: 380aa MW: 41515.2 Da PI: 8.8083

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S03734.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.5	7.1e-34	49	103	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Jcr4S03734.10 49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.485	46	106	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-32	48	104	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.06E-17	48	103	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-25	49	104	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-9	51	102	IPR001005	SANT/Myb domain
Pfam	PF14379	2.1E-10	135	171	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MYRPKSVPSS SLVHKSPPVH GQHLDCGAIA MDPINGGNSL NNNPSLASKQ RLRWTHELHE 60 RFVDAVAQLG GPDRATPKGV LRVMGVQGLT IYHVKSHLQK YRLAKYLPDS SSDGKKADKK 120 ETGDMLSNLD GSSGMQITEA LKLQMEVQRQ LQLRIEAQGK YLKKIIEEQQ RLSGVLVEVP 180 GAGASGPISG DSCPESDKTD PATPAPTSES PIQEKAAKER APDKSLSIDE SFSSHHEPLT 240 PDSRCNVGSP AESPKGERSM KKQRVCMATA YAKPEMVLTH QILESSLNSY PQSHSVFLTR 300 EPFDPSSGLS MGNDDQIEKV LEVHPKGRCH GKQIIARTLY DLGKFAGCLP LSSAEQAYCT 360 SQEALKMLKN LLKSRTMKAQ

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MYRPKSVPSS SLVHKSPPVH GQHLDCGAIA MDPINGGNSL NNNPSLASKQ RLRWTHELHE  60
RFVDAVAQLG GPDRATPKGV LRVMGVQGLT IYHVKSHLQK YRLAKYLPDS SSDGKKADKK  120
ETGDMLSNLD GSSGMQITEA LKLQMEVQRQ LQLRIEAQGK YLKKIIEEQQ RLSGVLVEVP  180
GAGASGPISG DSCPESDKTD PATPAPTSES PIQEKAAKER APDKSLSIDE SFSSHHEPLT  240
PDSRCNVGSP AESPKGERSM KKQRVCMATA YAKPEMVLTH QILESSLNSY PQSHSVFLTR  300
EPFDPSSGLS MGNDDQIEKV LEVHPKGRCH GKQIIARTLY DLGKFAGCLP LSSAEQAYCT  360
SQEALKMLKN LLKSRTMKAQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-23	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-23	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-23	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-23	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FQ383717	1e-132	FQ383717.1 Vitis vinifera clone SS0ABG19YO09.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020538214.1	0.0	myb family transcription factor PHL7 isoform X1
Swissprot	Q9SJW0	1e-127	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A067KB23	0.0	A0A067KB23_JATCU; Uncharacterized protein
STRING	XP_002525238.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8610	33	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-119	G2-like family protein