PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S03248.30
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 554aa    MW: 64259.2 Da    PI: 5.0968
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S03248.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00045526544321
                    ETTTTEEESSHHHHHHHHH CS
        zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                    C++Cg+ F ++  L++H++
  Jcr4S03248.30 526 CEKCGEEFESRNKLHKHLS 544
                    *****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465659.29E-19665IPR001623DnaJ domain
SMARTSM002711.5E-19668IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1101.4E-17665IPR001623DnaJ domain
CDDcd062571.07E-16765IPR001623DnaJ domain
PROSITE profilePS5007615.763776IPR001623DnaJ domain
PfamPF002268.3E-16865IPR001623DnaJ domain
PRINTSPR006251.4E-12927IPR001623DnaJ domain
PRINTSPR006251.4E-122742IPR001623DnaJ domain
PRINTSPR006251.4E-124868IPR001623DnaJ domain
SuperFamilySSF576675.56E-13236285No hitNo description
SMARTSM004514.9E-7240274IPR003604Zinc finger, U1-type
SMARTSM003551.7243267IPR015880Zinc finger, C2H2-like
PfamPF121713.5E-10243268IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280245267IPR007087Zinc finger, C2H2
SMARTSM003552.3524548IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.515524553IPR007087Zinc finger, C2H2
PROSITE patternPS000280526548IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MASEKRCHYE VLGLSQDCTA DEIRSAYKKL ALQRHPDKLV QSGLSQAEAT AQFQELAQAY  60
EVYSDVFNKI YANEISFCKK LGLGLENVRE APVMGNLESP YGQVTAFYNY WFGFSTVMDF  120
CWVDQYDVMA GPNRKSRRVM EEENKKLRKK ARREYNETVR GLAEFVKKRD KRVIDMMVKK  180
NAEIEKKKKE EKERKKKLER ERMERARTYE EPEWARVNED ELEDLEGFEE EEKEKKGSGG  240
KELYCVVCSK KFKSEKQWKN HEQSKKHKEK VAELRESFRH EDKEEEEKEE EMKEDFEGDE  300
EENNKEVVSN LEEVEKRLEE DFRIREEGNG VEIPELSDAE DGFFDVEDGD EAETLGVGDA  360
NVHGDDNEDG DGEMSVLEAM LSGHKSRKNR ASRYVSEDVT VEVNVKDMNE EMEAMEYNNR  420
KSRRRRGKKE RGKNDGGVPE KGDFDETNLD DEINGHGDMH IQESSSTSFV ENEKDGNNDD  480
HLRKTKSSHQ FVDNKGVAKK EPNTKLKIPS KGKKGKATSK NSVNICEKCG EEFESRNKLH  540
KHLSDTGHST LKYR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144152KKLRKKARR
2166188KKRDKRVIDMMVKKNAEIEKKKK
3422429RRRRGKKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012080375.10.0DNAJ protein JJJ1 homolog
SwissprotQ9C9111e-141JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A067K8K80.0A0A067K8K8_JATCU; Uncharacterized protein
STRINGcassava4.1_003940m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65511922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-110DNAJ heat shock N-terminal domain-containing protein