PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S02864.10 | ||||||||
Common Name | JCGZ_02002, LOC105631806 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | C3H | ||||||||
Protein Properties | Length: 349aa MW: 37654.5 Da PI: 8.2643 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.6 | 1.8e-12 | 49 | 74 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C +++rtG+C yG+rC+F+H++ Jcr4S02864.10 49 DEANCIYYLRTGFCGYGARCRFNHPR 74 6899********************96 PP | |||||||
2 | zf-CCCH | 40 | 6.4e-13 | 96 | 120 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCk+G++Ck++H++ Jcr4S02864.10 96 QPVCQYYMRTGTCKFGASCKYHHPK 120 689********************96 PP | |||||||
3 | zf-CCCH | 35.7 | 1.5e-11 | 141 | 166 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ +tG+Ck+G++CkF+H++ Jcr4S02864.10 141 GEKECTYYVKTGQCKFGATCKFHHPQ 166 7899********************97 PP | |||||||
4 | zf-CCCH | 39.3 | 1.1e-12 | 300 | 325 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG Ck+G++C+++H+p Jcr4S02864.10 300 DQPECQYYMKTGNCKFGSSCRYHHPP 325 689*********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.619 | 47 | 75 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.2E-4 | 47 | 74 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.2E-10 | 49 | 74 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-6 | 50 | 75 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.6E-6 | 53 | 74 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.882 | 93 | 121 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-7 | 93 | 120 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.76E-7 | 96 | 122 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-10 | 96 | 120 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-6 | 98 | 122 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-5 | 139 | 166 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.094 | 139 | 167 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-6 | 141 | 167 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.8E-9 | 141 | 166 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-4 | 145 | 165 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.009 | 298 | 326 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.1E-6 | 298 | 325 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.2E-10 | 300 | 325 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-6 | 301 | 326 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.3E-6 | 304 | 325 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MDRYGRNQEG SQSDPSPEWT TPGPESGLEE GVWPLGLGEG ESGYPERPDE ANCIYYLRTG 60 FCGYGARCRF NHPRDRGAVI GAARAGAGEF PERVGQPVCQ YYMRTGTCKF GASCKYHHPK 120 QEGGSVSPVS LNYYGYPLRP GEKECTYYVK TGQCKFGATC KFHHPQPANL QIVPQSPAPQ 180 VAPVPAPIPA PALYPSSVPS TQQYGLVVAR PSLLPSSYVQ GPYGPMLLSP GVVPYPSWSP 240 YPAPVSPVAS PSTQPGVGSG SLYQLSPSAP AYTGAYQSML SSVGPSSSSQ KEPFFPERPD 300 QPECQYYMKT GNCKFGSSCR YHHPPELIAP KTNVVLSPIG LPLRPVRII |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012069378.1 | 0.0 | zinc finger CCCH domain-containing protein 34 | ||||
Swissprot | Q9SQU4 | 1e-139 | C3H34_ARATH; Zinc finger CCCH domain-containing protein 34 | ||||
TrEMBL | A0A067L7C5 | 0.0 | A0A067L7C5_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_024892m | 0.0 | (Manihot esculenta) | ||||
STRING | XP_002516892.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF983 | 34 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06410.1 | 1e-112 | C3H family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105631806 |
Publications ? help Back to Top | |||
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