PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S02331.10

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

MYB_related

Protein Properties

Length: 228aa MW: 23905.7 Da PI: 7.9727

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S02331.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.4	9.4e-20	12	57	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd+ l ++v+++G+++W++I++ ++ gR++k+c++rw + Jcr4S02331.10 12 KGPWSPEEDDALQKLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 57 79****************************.*********985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	27.221	7	62	IPR017930	Myb domain
SuperFamily	SSF46689	8.03E-22	9	83	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-17	11	60	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-19	12	57	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.2E-23	12	57	IPR009057	Homeodomain-like
CDD	cd00167	3.91E-17	14	56	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.7E-6	58	83	IPR009057	Homeodomain-like
SMART	SM00717	56	63	160	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MAVTNKDVDR IKGPWSPEED DALQKLVQKH GPRNWSLISK SIPGRSGKSC RLRWCNQLSP 60 QVEHRAFTPE EDETIIRAHA RFGLYMSPGS PSGSDVSDSS VPVLSSSHVY RPVARTGAVI 120 PPVETTSSSN NNDPPTSLCL SLPGVDSSEV SNRVAESTQA TNTISLMPPM NNVSSPPPAR 180 PPPAASVTTT AGGGGGSGGA NVGMCFQAAG GEGFRNVAMN RVGVSKIE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	1e-23	11	83	3	75	MYB PROTO-ONCOGENE PROTEIN
1h88_C	6e-23	11	83	57	129	MYB PROTO-ONCOGENE PROTEIN
1h89_C	6e-23	11	83	57	129	MYB PROTO-ONCOGENE PROTEIN
1mse_C	1e-23	11	83	3	75	C-Myb DNA-Binding Domain
1msf_C	1e-23	11	83	3	75	C-Myb DNA-Binding Domain
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM034621	0.0	KM034621.1 Jatropha curcas clone JcMYB001 MYB family protein gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012079312.1	2e-79	transcription factor MYB44
TrEMBL	A0A444WTK7	7e-81	A0A444WTK7_ARAHY; Uncharacterized protein
STRING	XP_007155887.1	2e-61	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF843	34	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	8e-49	myb domain protein 73