PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01993.10
Common NameJCGZ_07708, LOC105638186
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 371aa    MW: 40762.7 Da    PI: 7.8622
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01993.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH246.7e-08123143526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     C++f++ G Ck Gd+C FaHg
  Jcr4S01993.10 123 ACPDFRK-GGCKKGDSCEFAHG 143
                    7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.0870107IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-5118144IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.235119145IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5123145IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-6123143IPR000571Zinc finger, CCCH-type
SMARTSM0035611153176IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MMIGEPPTHS NPTVQIPPWD PFFDEPTSPL PSPFANCGNT SSPFLDSLTA LHRYLPSNEP  60
DSLSDDLDFA VDAFSCDHFR MYEFKVRRCA RGRSHDWTEC PYAHPGEKAR RRDPRRYHYS  120
GTACPDFRKG GCKKGDSCEF AHGVFECWLH PARYRTQPCK DGPACRRRVC FFAHTPDQLR  180
VLPQQSPRGN APGSVEMEVG SPLRHHIDSY LSKAGSFLSS PTSILTSPPM SPPSDSPPIS  240
PSSPQVVGGS FNSVSELVAS MRSLQFSKMK AGSASWGMQN GSGFGSPRGS SLRPSFCSLP  300
STPTRAMTRA GLGQVDLWDS TLEEEPVMER VESGKDLRAK IYAKLSKENS LNRSDSAASA  360
PDVGWVSELV K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012077337.10.0zinc finger CCCH domain-containing protein 20
SwissprotQ9M0G21e-129C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A067KDD10.0A0A067KDD1_JATCU; Uncharacterized protein
STRINGcassava4.1_010028m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-126C3H family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  3. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]