PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S01684.40

Common Name

JCGZ_09298

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C3H

Protein Properties

Length: 305aa MW: 34805.1 Da PI: 6.0611

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S01684.40	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	48	2.1e-15	222	247	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tGtC+yGd C+FaHg Jcr4S01684.40 222 FKTELCNKWQETGTCPYGDHCQFAHG 247 79***********************9 PP
2	zf-CCCH	21	5.8e-07	260	285	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte Cr +++ +C+yG rC+F H+ Jcr4S01684.40 260 YKTEVCRMVLAGDICPYGHRCHFRHV 285 9********55********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	1.4E-19	216	254	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.57E-11	218	253	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.9E-10	221	248	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.652	221	249	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.2E-12	222	247	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.83E-8	255	289	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.2E-11	255	288	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.169	259	287	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.1E-5	259	286	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MESDFSSTGN DEFVVSTKSE YYSPNDVDFT SIFLPKASQS ITPSMDSRFV MQHQDLINRI 60 ALCLTRLREA AREVESLRLE NTALRSVNSE LNNHLSLLIQ ASVQEHCLPS DYNTTPLEVF 120 NDFRNLRFTG GDEGEELRED ESPTSVMEVQ PADTSERTTL PKSISVRSNG YLKTIQAGAT 180 KTRGVTRPKT ESPLNATQKV YVRGGKKEEE PLELEVYNQG MFKTELCNKW QETGTCPYGD 240 HCQFAHGLEE LRPVIRHPRY KTEVCRMVLA GDICPYGHRC HFRHVLTEQE RFMGDIKSRS 300 IKLER

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1rgo_A	1e-21	222	284	4	66	Butyrate response factor 2
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00383	ampDAP	Transfer from AT1G68200	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012075708.1	0.0	zinc finger CCCH domain-containing protein 15 isoform X1
Refseq	XP_020536035.1	0.0	zinc finger CCCH domain-containing protein 15 isoform X1
Swissprot	Q9C9F5	1e-88	C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBL	A0A067KRU6	0.0	A0A067KRU6_JATCU; Uncharacterized protein
STRING	cassava4.1_022862m	1e-180	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2778	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	2e-85	C3H family protein

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]