PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00882.40

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

C2H2

Protein Properties

Length: 321aa MW: 36090.1 Da PI: 7.6782

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00882.40	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.6	0.0002	222	244	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg +Fs+ +L+ H ++ H Jcr4S00882.40 222 ECPQCGARFSSVTTLVEHVQKlH 244 5******************9988 PP
2	zf-C2H2	15.7	4.2e-05	260	282	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C++ F+++ L+ H + H Jcr4S00882.40 260 VCPKCSRGFRDPVALVEHVERdH 282 7*****************99888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF118310	4.97E-13	6	49	No hit	No description
PROSITE profile	PS51039	8.097	10	56	IPR000058	Zinc finger, AN1-type
Gene3D	G3DSA:4.10.1110.10	2.4E-10	11	53	IPR000058	Zinc finger, AN1-type
Pfam	PF01428	9.3E-13	13	50	IPR000058	Zinc finger, AN1-type
SMART	SM00154	4.2E-4	13	52	IPR000058	Zinc finger, AN1-type
Gene3D	G3DSA:4.10.1110.10	6.0E-10	91	146	IPR000058	Zinc finger, AN1-type
SuperFamily	SSF118310	2.88E-8	93	142	No hit	No description
PROSITE profile	PS51039	7.941	98	146	IPR000058	Zinc finger, AN1-type
Pfam	PF01428	1.8E-7	101	141	IPR000058	Zinc finger, AN1-type
SMART	SM00154	0.044	101	142	IPR000058	Zinc finger, AN1-type
PROSITE profile	PS50157	9.494	221	249	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.012	221	244	IPR015880	Zinc finger, C2H2-like
Pfam	PF13894	9.6E-4	222	244	No hit	No description
PROSITE pattern	PS00028	0	223	244	IPR007087	Zinc finger, C2H2
SMART	SM00355	6.7	259	282	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	261	282	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MGTPQFPDLG KHCNKEDCRQ IDFLPFTCDR CSQIFCLEHR SYAKHNCLKA DSKDVTVVIC 60 PLCAKGVRLN PDEDPNISWE THVNTECDPS NYDKVTKKRK CPVRGCREVL TFSNTIRCRD 120 CTIDHCLKHR FGPDHSCPGP KKPEMGFQFM ALLNRSRKEE SKPKQSQATP SGRWATAFRN 180 AASSVRASAE AGMAKLSTEI SQALQTTKSD AGPSSTGGLE EECPQCGARF SSVTTLVEHV 240 QKLHEKSGNQ YRVLNLPVDV CPKCSRGFRD PVALVEHVER DHGVEVCMIL WQLWSMLRGI 300 MELWLDFIKS EAADAQITFE H

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in environmental stress response. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00306	DAP	Transfer from AT2G41835	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, dehydration and salt stress. {ECO:0000269\|PubMed:17033811}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012086146.1	0.0	zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
Swissprot	Q0D5B9	1e-124	SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBL	A0A067K2L3	0.0	A0A067K2L3_JATCU; Uncharacterized protein
STRING	cassava4.1_013007m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5864	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	1e-125	C2H2 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]