PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00585.10 | ||||||||
Common Name | JCGZ_12524, LOC105639991 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | C2H2 | ||||||||
Protein Properties | Length: 194aa MW: 21373.1 Da PI: 8.8723 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18 | 8e-06 | 69 | 91 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+ksF+++ L H +H Jcr4S00585.10 69 YKCKLCNKSFPNHQALAGHKASH 91 9******************9998 PP | |||||||
2 | zf-C2H2 | 12.9 | 0.00034 | 126 | 148 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+++F++ L H r+H Jcr4S00585.10 126 HECSICHRTFPSGQALGGHKRRH 148 78*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.9E-9 | 69 | 91 | No hit | No description |
SMART | SM00355 | 9.0E-4 | 69 | 91 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.0E-8 | 69 | 93 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.325 | 69 | 91 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 71 | 91 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.9E-9 | 121 | 148 | No hit | No description |
Pfam | PF13912 | 2.1E-13 | 125 | 150 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.051 | 126 | 148 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.245 | 126 | 148 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 128 | 148 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MPSNLLHNYK DHRSFETPAK RKRTKRSRTE NSPTEEEYLA LCLLMLAKGT TAATNYDHSS 60 PSPSLELCYK CKLCNKSFPN HQALAGHKAS HRKPVGVVDD DQSETASAFT TSKTISKVIS 120 VNVKTHECSI CHRTFPSGQA LGGHKRRHYD GGSKSGGTGC DGRFDSEKKG MDLSLISQHD 180 FDLNLPALPE LPMV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012079586.1 | 1e-144 | zinc finger protein AZF2 | ||||
Swissprot | Q9SSW1 | 2e-34 | AZF1_ARATH; Zinc finger protein AZF1 | ||||
TrEMBL | A0A067KAM0 | 1e-142 | A0A067KAM0_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_016481m | 3e-55 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1327 | 32 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49930.1 | 2e-40 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105639991 |
Publications ? help Back to Top | |||
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