PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00577.40
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family B3
Protein Properties Length: 1133aa    MW: 130120 Da    PI: 10.2687
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00577.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.52.3e-13361151398
                    TT-E...E--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
             B3  13 sgrl...vlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                    s+ +   ++p  f++  +g+ +++ + +l+++ g + W v++  ++++    +++GWkeFv+ ++L +gD++vF+l+g++ f   v vf+
  Jcr4S00577.40  36 SKSMflqSIPVAFFKFLKGQ-ACD-KAVLRSRAGqKLWHVNI--NGGR----FEDGWKEFVQNHDLHVGDILVFELEGNMVF--DVLVFD 115
                    33333349******877877.465.899999888799*****..8887....9*************************9999..777776 PP

2B362.37.6e-20195287296
                    EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    f v ++s+++k++rl+lp  fa+ hg++  ++ +++l d+++rsW v l ++k+++r+++++GW   + an Lk+gD+++F+l+++ ++++++k+
  Jcr4S00577.40 195 FEVKLTSYSSKESRLCLPMGFARLHGLN-GRNCKMILLDQENRSWLVDLGFKKSDDRVFIGRGWYACCVANYLKAGDSLIFELIEN-GKRPTLKF 287
                    455669*******************988.56679*************************************************995.44466655 PP

3B3581.7e-18314405299
                    EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
             B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                    +k+ ++s++  ++r+++pkkfa+  ++ ++++  ++l+d++gr W  kl  ++k g+ ++  GW+eF  an+Lk gD ++Fkl++ +++++v+k++
  Jcr4S00577.40 314 LKIQVTSNSAIRSRVCIPKKFAALSNLRNRCG--IILMDQEGRCWPAKL--WNKAGEAYIH-GWREFHVANDLKPGDCLIFKLTE-RGKRPVFKLC 403
                    5778899999999*********8889998897..***************..99999*9999.********************987.67779***** PP

                    -S CS
             B3  98 rk 99 
                    rk
  Jcr4S00577.40 404 RK 405
                    97 PP

4B3581.7e-18430523198
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                    f+ + tps+v++s+ +++p++f++ ++++ ++  +++l++++g sW vkl ++k+s+   y+l   W++F  angLk gD+++F+l++ +++++v+
  Jcr4S00577.40 430 FVAKVTPSSVTQSK-MYIPRNFTRLNNLNDTCC-EMILKNQEGMSWLVKL-WNKQSDNeaYILD--WNNFRVANGLKPGDSFIFELIE-NGKRPVL 519
                    67788899999998.***********9998886.****************.6555555789998..********************99.6777999 PP

                    EEE- CS
             B3  95 kvfr 98 
                    k++r
  Jcr4S00577.40 520 KMCR 523
                    9998 PP

5B363.53.3e-20553638495
                    E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
             B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                    v+++++++k + l++p++fa++h+++k +s +++le+e+grsW+v l   k sg+ +++ GW eFvkan L+eg +++++l++r   e+++k
  Jcr4S00577.40 553 VTMKASYFKYQ-LRIPRNFARRHSLSK-CS-KMILENEKGRSWSVSL--GKDSGGSYIGCGWAEFVKANCLREGTVFMLELVKRG-DEPMMK 638
                    55677788876.***********9995.54.9***************..********************************9964.446665 PP

6B351.12.4e-166737501098
                    HHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
             B3  10 vlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +k+g l++p +f+ +h +g+ e++ + +++++ g++W vk+  ++++    +++GW+eF+++++L +gD +vF+++g++ f   ++vf+
  Jcr4S00577.40 673 GFKQG-LSIPVSFF-KHpKGQ-ECD-KAVFRSSGGKVWHVKI--NGRR----FEGGWEEFAQEHDLHVGDLLVFRHEGNMVF--DFMVFD 750
                    55665.********.663655.565.999*************..8887....9***********************999999..666665 PP

7B354.22.7e-17808901297
                    EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
             B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                    f v ++s++ +s+rl l+++fa+++g+ +++  +++l++++gr W   l ++k+s+ +++++G ++F  an+L+ gD+++F+l++ + +++v+k++
  Jcr4S00577.40 808 FVVNVTSYSIRSSRLNLSREFARTNGLCNRR-CKIVLKNLEGRPWVADLGFKKSSNLVYISQGLRSFYTANNLEPGDSFIFELIE-NWKKPVLKMR 901
                    57889********************988655.59*************************************************98.6666788776 PP

8B365.11e-209221010293
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
             B3    2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93  
                     f v +++++ ++ r+ +p+kfa+++g++k+ + +++l+de+grsW  +l  +k++g+ ++++GW  F +an+Lk gD+++F+l+++ +++++
  Jcr4S00577.40  922 FVVNMTAYSARRPRINIPRKFARSNGLNKRFG-KIVLMDEEGRSWPANL-GQKNDGQAYIGQGWTAFRNANKLKPGDSFMFELTKK-GKKPL 1010
                     5678899*********************9887.****************.788888999***********************9874.44444 PP

9B362.85.3e-2010311122195
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
             B3    1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94  
                     ff ++ ++++l+s +l +p++f++++++++++s +++l++e grsW+v +  r++sg++ l++GW+ F++angLkegD+++++l++ +++++ +
  Jcr4S00577.40 1031 FFYAMFRASSLESYWLKFPRDFVNKNDIISKCS-KMILTNEGGRSWTVSV-GRNNSGEVSLRSGWNVFAQANGLKEGDVFMLELIK-KGKSPAM 1121
                     6778899999****************9998887.9***************.7999999*************************998.5554555 PP

                     E CS
             B3   95 k 95  
                     k
  Jcr4S00577.40 1122 K 1122
                     5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-1725119IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-939111IPR003340B3 DNA binding domain
SMARTSM010195.0E-940117IPR003340B3 DNA binding domain
SuperFamilySSF1019366.87E-1640124IPR015300DNA-binding pseudobarrel domain
CDDcd100172.49E-1243115No hitNo description
PROSITE profilePS5086311.25144117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-17191288IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-18191287IPR015300DNA-binding pseudobarrel domain
CDDcd100173.50E-18193287No hitNo description
PROSITE profilePS5086313.479194290IPR003340B3 DNA binding domain
SMARTSM010192.4E-21195291IPR003340B3 DNA binding domain
PfamPF023623.3E-18195287IPR003340B3 DNA binding domain
SuperFamilySSF1019361.9E-16311409IPR015300DNA-binding pseudobarrel domain
CDDcd100171.50E-16313404No hitNo description
SMARTSM010191.7E-12313406IPR003340B3 DNA binding domain
PROSITE profilePS5086313.042313405IPR003340B3 DNA binding domain
PfamPF023622.4E-16314405IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-15317404IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-17426522IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-19427523IPR015300DNA-binding pseudobarrel domain
CDDcd100176.45E-17428523No hitNo description
PROSITE profilePS5086312.746429525IPR003340B3 DNA binding domain
SMARTSM010193.6E-22430525IPR003340B3 DNA binding domain
PfamPF023623.7E-17430523IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-22547635IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-20548640IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.267549643IPR003340B3 DNA binding domain
CDDcd100172.81E-17549640No hitNo description
SMARTSM010197.8E-14551643IPR003340B3 DNA binding domain
PfamPF023627.3E-19552639IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-20661759IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-21662754IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.337663752IPR003340B3 DNA binding domain
CDDcd100171.33E-17664750No hitNo description
SMARTSM010191.6E-17666752IPR003340B3 DNA binding domain
PfamPF023623.2E-12675747IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-15805901IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-17806900IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.547807904IPR003340B3 DNA binding domain
CDDcd100179.14E-14807891No hitNo description
SMARTSM010195.2E-17808904IPR003340B3 DNA binding domain
PfamPF023621.0E-15808901IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.5E-229191014IPR015300DNA-binding pseudobarrel domain
CDDcd100172.86E-179211009No hitNo description
PROSITE profilePS5086315.5249211016IPR003340B3 DNA binding domain
SuperFamilySSF1019361.18E-199211017IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.4E-209221017IPR003340B3 DNA binding domain
PfamPF023623.5E-199221010IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.1E-1810271118IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.35E-1810281123IPR015300DNA-binding pseudobarrel domain
CDDcd100175.06E-1610301124No hitNo description
SMARTSM010192.9E-1710311127IPR003340B3 DNA binding domain
PROSITE profilePS5086314.50810311127IPR003340B3 DNA binding domain
PfamPF023624.2E-1810311122IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1133 aa     Download sequence    Send to blast
MLRFGVDSKK LTPKSLVLWQ HQEFFPKRTQ AQELRSKSMF LQSIPVAFFK FLKGQACDKA  60
VLRSRAGQKL WHVNINGGRF EDGWKEFVQN HDLHVGDILV FELEGNMVFD VLVFDPSFCE  120
KEYPSFATSQ IHVKEEKVEI EEEEEHIAKR STPGAFISKL QIFLFFPTYK KSPNRKSKTR  180
TSFEAAPAVV KHPYFEVKLT SYSSKESRLC LPMGFARLHG LNGRNCKMIL LDQENRSWLV  240
DLGFKKSDDR VFIGRGWYAC CVANYLKAGD SLIFELIENG KRPTLKFSNK LKKEKQPITD  300
LQAKASSVLE HPYLKIQVTS NSAIRSRVCI PKKFAALSNL RNRCGIILMD QEGRCWPAKL  360
WNKAGEAYIH GWREFHVAND LKPGDCLIFK LTERGKRPVF KLCRKLIKKR QPVTTVEVEA  420
NSSVLKCPYF VAKVTPSSVT QSKMYIPRNF TRLNNLNDTC CEMILKNQEG MSWLVKLWNK  480
QSDNEAYILD WNNFRVANGL KPGDSFIFEL IENGKRPVLK MCRLNFEHKA NQEQCHQDAE  540
AGSSLMRHPY FYVTMKASYF KYQLRIPRNF ARRHSLSKCS KMILENEKGR SWSVSLGKDS  600
GGSYIGCGWA EFVKANCLRE GTVFMLELVK RGDEPMMKFY GSFYPSPSFT FSSNSCXKML  660
PSKPHFFQPL LPGFKQGLSI PVSFFKHPKG QECDKAVFRS SGGKVWHVKI NGRRFEGGWE  720
EFAQEHDLHV GDLLVFRHEG NMVFDFMVFD PSECEREYPL FHVKQEIQTS EEEEDQLPNK  780
SSPGEVTKKK KKKVELSSKG KTAASSYFVV NVTSYSIRSS RLNLSREFAR TNGLCNRRCK  840
IVLKNLEGRP WVADLGFKKS SNLVYISQGL RSFYTANNLE PGDSFIFELI ENWKKPVLKM  900
RELTRKKQVK TESGDKAISS CFVVNMTAYS ARRPRINIPR KFARSNGLNK RFGKIVLMDE  960
EGRSWPANLG QKNDGQAYIG QGWTAFRNAN KLKPGDSFMF ELTKKGKKPL LIMRWKTNTK  1020
TKSERWTDAP FFYAMFRASS LESYWLKFPR DFVNKNDIIS KCSKMILTNE GGRSWTVSVG  1080
RNNSGEVSLR SGWNVFAQAN GLKEGDVFML ELIKKGKSPA MKFYGAKLQN GIA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020536495.10.0B3 domain-containing protein REM13
TrEMBLA0A067KBF70.0A0A067KBF7_JATCU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16161410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.11e-58B3 family protein