PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00577.40 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | B3 | ||||||||
Protein Properties | Length: 1133aa MW: 130120 Da PI: 10.2687 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.5 | 2.3e-13 | 36 | 115 | 13 | 98 |
TT-E...E--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 13 sgrl...vlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 s+ + ++p f++ +g+ +++ + +l+++ g + W v++ ++++ +++GWkeFv+ ++L +gD++vF+l+g++ f v vf+ Jcr4S00577.40 36 SKSMflqSIPVAFFKFLKGQ-ACD-KAVLRSRAGqKLWHVNI--NGGR----FEDGWKEFVQNHDLHVGDILVFELEGNMVF--DVLVFD 115 33333349******877877.465.899999888799*****..8887....9*************************9999..777776 PP | |||||||
2 | B3 | 62.3 | 7.6e-20 | 195 | 287 | 2 | 96 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f v ++s+++k++rl+lp fa+ hg++ ++ +++l d+++rsW v l ++k+++r+++++GW + an Lk+gD+++F+l+++ ++++++k+ Jcr4S00577.40 195 FEVKLTSYSSKESRLCLPMGFARLHGLN-GRNCKMILLDQENRSWLVDLGFKKSDDRVFIGRGWYACCVANYLKAGDSLIFELIEN-GKRPTLKF 287 455669*******************988.56679*************************************************995.44466655 PP | |||||||
3 | B3 | 58 | 1.7e-18 | 314 | 405 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +k+ ++s++ ++r+++pkkfa+ ++ ++++ ++l+d++gr W kl ++k g+ ++ GW+eF an+Lk gD ++Fkl++ +++++v+k++ Jcr4S00577.40 314 LKIQVTSNSAIRSRVCIPKKFAALSNLRNRCG--IILMDQEGRCWPAKL--WNKAGEAYIH-GWREFHVANDLKPGDCLIFKLTE-RGKRPVFKLC 403 5778899999999*********8889998897..***************..99999*9999.********************987.67779***** PP -S CS B3 98 rk 99 rk Jcr4S00577.40 404 RK 405 97 PP | |||||||
4 | B3 | 58 | 1.7e-18 | 430 | 523 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+ + tps+v++s+ +++p++f++ ++++ ++ +++l++++g sW vkl ++k+s+ y+l W++F angLk gD+++F+l++ +++++v+ Jcr4S00577.40 430 FVAKVTPSSVTQSK-MYIPRNFTRLNNLNDTCC-EMILKNQEGMSWLVKL-WNKQSDNeaYILD--WNNFRVANGLKPGDSFIFELIE-NGKRPVL 519 67788899999998.***********9998886.****************.6555555789998..********************99.6777999 PP EEE- CS B3 95 kvfr 98 k++r Jcr4S00577.40 520 KMCR 523 9998 PP | |||||||
5 | B3 | 63.5 | 3.3e-20 | 553 | 638 | 4 | 95 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 v+++++++k + l++p++fa++h+++k +s +++le+e+grsW+v l k sg+ +++ GW eFvkan L+eg +++++l++r e+++k Jcr4S00577.40 553 VTMKASYFKYQ-LRIPRNFARRHSLSK-CS-KMILENEKGRSWSVSL--GKDSGGSYIGCGWAEFVKANCLREGTVFMLELVKRG-DEPMMK 638 55677788876.***********9995.54.9***************..********************************9964.446665 PP | |||||||
6 | B3 | 51.1 | 2.4e-16 | 673 | 750 | 10 | 98 |
HHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 10 vlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +k+g l++p +f+ +h +g+ e++ + +++++ g++W vk+ ++++ +++GW+eF+++++L +gD +vF+++g++ f ++vf+ Jcr4S00577.40 673 GFKQG-LSIPVSFF-KHpKGQ-ECD-KAVFRSSGGKVWHVKI--NGRR----FEGGWEEFAQEHDLHVGDLLVFRHEGNMVF--DFMVFD 750 55665.********.663655.565.999*************..8887....9***********************999999..666665 PP | |||||||
7 | B3 | 54.2 | 2.7e-17 | 808 | 901 | 2 | 97 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 f v ++s++ +s+rl l+++fa+++g+ +++ +++l++++gr W l ++k+s+ +++++G ++F an+L+ gD+++F+l++ + +++v+k++ Jcr4S00577.40 808 FVVNVTSYSIRSSRLNLSREFARTNGLCNRR-CKIVLKNLEGRPWVADLGFKKSSNLVYISQGLRSFYTANNLEPGDSFIFELIE-NWKKPVLKMR 901 57889********************988655.59*************************************************98.6666788776 PP | |||||||
8 | B3 | 65.1 | 1e-20 | 922 | 1010 | 2 | 93 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f v +++++ ++ r+ +p+kfa+++g++k+ + +++l+de+grsW +l +k++g+ ++++GW F +an+Lk gD+++F+l+++ +++++ Jcr4S00577.40 922 FVVNMTAYSARRPRINIPRKFARSNGLNKRFG-KIVLMDEEGRSWPANL-GQKNDGQAYIGQGWTAFRNANKLKPGDSFMFELTKK-GKKPL 1010 5678899*********************9887.****************.788888999***********************9874.44444 PP | |||||||
9 | B3 | 62.8 | 5.3e-20 | 1031 | 1122 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ff ++ ++++l+s +l +p++f++++++++++s +++l++e grsW+v + r++sg++ l++GW+ F++angLkegD+++++l++ +++++ + Jcr4S00577.40 1031 FFYAMFRASSLESYWLKFPRDFVNKNDIISKCS-KMILTNEGGRSWTVSV-GRNNSGEVSLRSGWNVFAQANGLKEGDVFMLELIK-KGKSPAM 1121 6778899999****************9998887.9***************.7999999*************************998.5554555 PP E CS B3 95 k 95 k Jcr4S00577.40 1122 K 1122 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.8E-17 | 25 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.3E-9 | 39 | 111 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.0E-9 | 40 | 117 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 6.87E-16 | 40 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.49E-12 | 43 | 115 | No hit | No description |
PROSITE profile | PS50863 | 11.251 | 44 | 117 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-17 | 191 | 288 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.08E-18 | 191 | 287 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.50E-18 | 193 | 287 | No hit | No description |
PROSITE profile | PS50863 | 13.479 | 194 | 290 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.4E-21 | 195 | 291 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.3E-18 | 195 | 287 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.9E-16 | 311 | 409 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.50E-16 | 313 | 404 | No hit | No description |
SMART | SM01019 | 1.7E-12 | 313 | 406 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.042 | 313 | 405 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-16 | 314 | 405 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-15 | 317 | 404 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.2E-17 | 426 | 522 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-19 | 427 | 523 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.45E-17 | 428 | 523 | No hit | No description |
PROSITE profile | PS50863 | 12.746 | 429 | 525 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.6E-22 | 430 | 525 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.7E-17 | 430 | 523 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.7E-22 | 547 | 635 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.9E-20 | 548 | 640 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.267 | 549 | 643 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.81E-17 | 549 | 640 | No hit | No description |
SMART | SM01019 | 7.8E-14 | 551 | 643 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.3E-19 | 552 | 639 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.35E-20 | 661 | 759 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-21 | 662 | 754 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.337 | 663 | 752 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.33E-17 | 664 | 750 | No hit | No description |
SMART | SM01019 | 1.6E-17 | 666 | 752 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-12 | 675 | 747 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-15 | 805 | 901 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.04E-17 | 806 | 900 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.547 | 807 | 904 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.14E-14 | 807 | 891 | No hit | No description |
SMART | SM01019 | 5.2E-17 | 808 | 904 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-15 | 808 | 901 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.5E-22 | 919 | 1014 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.86E-17 | 921 | 1009 | No hit | No description |
PROSITE profile | PS50863 | 15.524 | 921 | 1016 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.18E-19 | 921 | 1017 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.4E-20 | 922 | 1017 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.5E-19 | 922 | 1010 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 9.1E-18 | 1027 | 1118 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.35E-18 | 1028 | 1123 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.06E-16 | 1030 | 1124 | No hit | No description |
SMART | SM01019 | 2.9E-17 | 1031 | 1127 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.508 | 1031 | 1127 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.2E-18 | 1031 | 1122 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1133 aa Download sequence Send to blast |
MLRFGVDSKK LTPKSLVLWQ HQEFFPKRTQ AQELRSKSMF LQSIPVAFFK FLKGQACDKA 60 VLRSRAGQKL WHVNINGGRF EDGWKEFVQN HDLHVGDILV FELEGNMVFD VLVFDPSFCE 120 KEYPSFATSQ IHVKEEKVEI EEEEEHIAKR STPGAFISKL QIFLFFPTYK KSPNRKSKTR 180 TSFEAAPAVV KHPYFEVKLT SYSSKESRLC LPMGFARLHG LNGRNCKMIL LDQENRSWLV 240 DLGFKKSDDR VFIGRGWYAC CVANYLKAGD SLIFELIENG KRPTLKFSNK LKKEKQPITD 300 LQAKASSVLE HPYLKIQVTS NSAIRSRVCI PKKFAALSNL RNRCGIILMD QEGRCWPAKL 360 WNKAGEAYIH GWREFHVAND LKPGDCLIFK LTERGKRPVF KLCRKLIKKR QPVTTVEVEA 420 NSSVLKCPYF VAKVTPSSVT QSKMYIPRNF TRLNNLNDTC CEMILKNQEG MSWLVKLWNK 480 QSDNEAYILD WNNFRVANGL KPGDSFIFEL IENGKRPVLK MCRLNFEHKA NQEQCHQDAE 540 AGSSLMRHPY FYVTMKASYF KYQLRIPRNF ARRHSLSKCS KMILENEKGR SWSVSLGKDS 600 GGSYIGCGWA EFVKANCLRE GTVFMLELVK RGDEPMMKFY GSFYPSPSFT FSSNSCXKML 660 PSKPHFFQPL LPGFKQGLSI PVSFFKHPKG QECDKAVFRS SGGKVWHVKI NGRRFEGGWE 720 EFAQEHDLHV GDLLVFRHEG NMVFDFMVFD PSECEREYPL FHVKQEIQTS EEEEDQLPNK 780 SSPGEVTKKK KKKVELSSKG KTAASSYFVV NVTSYSIRSS RLNLSREFAR TNGLCNRRCK 840 IVLKNLEGRP WVADLGFKKS SNLVYISQGL RSFYTANNLE PGDSFIFELI ENWKKPVLKM 900 RELTRKKQVK TESGDKAISS CFVVNMTAYS ARRPRINIPR KFARSNGLNK RFGKIVLMDE 960 EGRSWPANLG QKNDGQAYIG QGWTAFRNAN KLKPGDSFMF ELTKKGKKPL LIMRWKTNTK 1020 TKSERWTDAP FFYAMFRASS LESYWLKFPR DFVNKNDIIS KCSKMILTNE GGRSWTVSVG 1080 RNNSGEVSLR SGWNVFAQAN GLKEGDVFML ELIKKGKSPA MKFYGAKLQN GIA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020536495.1 | 0.0 | B3 domain-containing protein REM13 | ||||
TrEMBL | A0A067KBF7 | 0.0 | A0A067KBF7_JATCU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16161 | 4 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00260.1 | 1e-58 | B3 family protein |