PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00534.100 | ||||||||
Common Name | JCGZ_07721, LOC105638199 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | ERF | ||||||||
Protein Properties | Length: 199aa MW: 21707.1 Da PI: 4.0604 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.4 | 4.7e-15 | 2 | 44 | 10 | 55 |
AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g Jcr4S00534.100 2 RNWGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 44 57**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.112 | 1 | 52 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-26 | 1 | 53 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.8E-29 | 1 | 58 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.43E-27 | 1 | 54 | No hit | No description |
SuperFamily | SSF54171 | 1.05E-17 | 2 | 53 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.6E-9 | 2 | 44 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MRNWGKWVSE IREPRKKSRI WLGTFPTPEM AARAHDVAAL SIKGNSAILN FPELANSLPR 60 PASLAPRDVQ AAAAKAAQMD QFDQKAFDSA TTTTTSSSSP SMSSASASSL SSLVSAMDLS 120 TGSEEELSEI VELPSLGTSY EWTELSSDFV FVDSVDGWVY PPPWVQSLED SYGDGCLFDE 180 MTVTNTISNS FEQGLLWEY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-14 | 2 | 56 | 21 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012077358.1 | 1e-144 | dehydration-responsive element-binding protein 3 | ||||
Swissprot | Q9LYD3 | 5e-68 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A067KPE2 | 1e-142 | A0A067KPE2_JATCU; Uncharacterized protein | ||||
STRING | XP_002516502.1 | 3e-87 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 8e-55 | ERF family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105638199 |
Publications ? help Back to Top | |||
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