PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00398.90 | ||||||||
Common Name | JCGZ_18353, LOC105642045 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB | ||||||||
Protein Properties | Length: 311aa MW: 36434.9 Da PI: 5.6774 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.2 | 8e-18 | 32 | 79 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd ll ++++++G g+W+ a++ g++Rt+k+c++rw++yl Jcr4S00398.90 32 RGPWTLEEDTLLTHYIARHGEGRWNMLAKYAGLKRTGKSCRLRWLNYL 79 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.6 | 1.1e-16 | 85 | 128 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Jcr4S00398.90 85 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 128 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.152 | 27 | 79 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.36E-31 | 30 | 126 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-15 | 31 | 81 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-16 | 32 | 79 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-23 | 33 | 86 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.99E-11 | 34 | 79 | No hit | No description |
PROSITE pattern | PS00175 | 0 | 47 | 56 | IPR001345 | Phosphoglycerate/bisphosphoglycerate mutase, active site |
PROSITE profile | PS51294 | 25.932 | 80 | 134 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-15 | 84 | 132 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 85 | 128 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-23 | 87 | 133 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.84E-11 | 89 | 128 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009686 | Biological Process | gibberellin biosynthetic process | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003824 | Molecular Function | catalytic activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MQSMRAPMSS VTKRMCNNIT NNSSEEESEL RRGPWTLEED TLLTHYIARH GEGRWNMLAK 60 YAGLKRTGKS CRLRWLNYLK PDIKRGNLTP QEQLLILELH SKWGNRWSKI AQHLPGRTDN 120 EIKNYWRTRV QRQARQLNIE SNSKRFLDAV RCFWMPRLLQ KVEQANSCSF SPLKTLQDSE 180 THELANFTLP DNNSFPQQYP ILENESPTSV YHLPTITGTT TTNPDSTEIS QYQPEILENR 240 ASPPLLDENV YNNLIMNESY YDMEGFNPMP EIGTFHDSTK ECQMEESNNW AFDDGMADTL 300 WNMDDIWQFR L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-26 | 29 | 134 | 4 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00216 | DAP | Transfer from AT1G68320 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034738 | 0.0 | KM034738.1 Jatropha curcas clone JcMYB119 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012082112.1 | 0.0 | transcription factor MYB62 isoform X2 | ||||
Swissprot | Q9C9G7 | 5e-91 | MYB62_ARATH; Transcription factor MYB62 | ||||
TrEMBL | A0A067JZX5 | 0.0 | A0A067JZX5_JATCU; MYB family protein | ||||
STRING | cassava4.1_012290m | 1e-137 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1639 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68320.1 | 2e-89 | myb domain protein 62 |
Link Out ? help Back to Top | |
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Entrez Gene | 105642045 |
Publications ? help Back to Top | |||
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