PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00168.70
Common NameJCGZ_23124, LOC105647332
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NAC
Protein Properties Length: 223aa    MW: 25755 Da    PI: 9.8538
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00168.70genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.39.1e-342611042128
            NAM  42 vePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    ++PwdLp      e+e yfFs+r+ ky++g+r+nrat+sgyWkatg dke++++ +++lvg+kktLvfy+g+ p+g++tdW+mheyrl
  Jcr4S00168.70  26 SDPWDLPGD---LEQERYFFSTREAKYPNGNRSNRATTSGYWKATGIDKEIVTSkGHQLVGMKKTLVFYRGKPPHGTRTDWIMHEYRL 110
                    79*****54...46799**********************************99856777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100539.2391142IPR003441NAC domain
SuperFamilySSF1019417.59E-4510142IPR003441NAC domain
PfamPF023656.5E-1615110IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MEKLNFVKNG VLRLPPGFRF HPTDESDPWD LPGDLEQERY FFSTREAKYP NGNRSNRATT  60
SGYWKATGID KEIVTSKGHQ LVGMKKTLVF YRGKPPHGTR TDWIMHEYRL MTTETNSPQK  120
KNIIQSPSMP MESWVLCRIF LKKRSTKNEE ENVQFGNENK VRKLRNTKPV FYDFLTKERT  180
DLNLAPSSSS SGSSGITEVS SNELDDHEES SSCNSFPFFR RKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-391214715170NO APICAL MERISTEM PROTEIN
1ut4_B5e-391214715170NO APICAL MERISTEM PROTEIN
1ut7_A5e-391214715170NO APICAL MERISTEM PROTEIN
1ut7_B5e-391214715170NO APICAL MERISTEM PROTEIN
3swm_A6e-391214718173NAC domain-containing protein 19
3swm_B6e-391214718173NAC domain-containing protein 19
3swm_C6e-391214718173NAC domain-containing protein 19
3swm_D6e-391214718173NAC domain-containing protein 19
3swp_A6e-391214718173NAC domain-containing protein 19
3swp_B6e-391214718173NAC domain-containing protein 19
3swp_C6e-391214718173NAC domain-containing protein 19
3swp_D6e-391214718173NAC domain-containing protein 19
4dul_A5e-391214715170NAC domain-containing protein 19
4dul_B5e-391214715170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7752891e-167KC775289.1 Jatropha curcas NAC transcription factor 011 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012088760.11e-161NAC domain-containing protein 83
SwissprotQ9FY932e-78NAC83_ARATH; NAC domain-containing protein 83
TrEMBLR4N5J41e-159R4N5J4_JATCU; NAC transcription factor 011
STRINGcassava4.1_014491m1e-140(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.15e-80NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  4. Wu Z, et al.
    Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.).
    PLoS ONE, 2015. 10(6): p. e0131890
    [PMID:26125188]