PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00166.140 | ||||||||
Common Name | JCGZ_08492, LOC105630636 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | C2H2 | ||||||||
Protein Properties | Length: 359aa MW: 39816.9 Da PI: 8.791 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.7 | 2.1e-05 | 146 | 169 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg+ F+++ +L++H+ H Jcr4S00166.140 146 FPCTACGEIFPTPNLLEQHLAIkH 169 89*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.182 | 146 | 174 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 148 | 169 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 8.06E-11 | 171 | 358 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 8.9E-7 | 291 | 358 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MAKGIVSVFN KFFSIFLLLV HLGCFIFTSK DNQPTKKRKI SPLSPSSSSS SFRLKPHRAL 60 SSSLSYLKRI FTSKACKNSS NVQSPVPTLT SARSSQQSIV SMVAPAEDQT SDIPPPRKMP 120 VPAGSCQESD ISTTNDQFFP LRNDIFPCTA CGEIFPTPNL LEQHLAIKHA VSELQDGDSG 180 KNIVYIIFKT GWSCKEKNPE ILRILKIHNS PKILSRFEEY RELVKAKAAR KRFRVNGNSS 240 VCNQQYCSVC GIIKCGFSPK MDGISTLSTS LRAHVAIPED IEEEFKFMNV KRAMLVCRVI 300 AGRVGSELEE EEEVNKEDGG FDSLLGRGGS GVHTRLDEEE LVVFNPRAVL PCFVIVYTV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020533879.1 | 0.0 | uncharacterized protein LOC105630636 | ||||
TrEMBL | A0A067LNS3 | 0.0 | A0A067LNS3_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_033577m | 0.0 | (Manihot esculenta) | ||||
STRING | XP_002525610.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10668 | 29 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29660.1 | 5e-92 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105630636 |
Publications ? help Back to Top | |||
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