PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00166.140
Common NameJCGZ_08492, LOC105630636
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C2H2
Protein Properties Length: 359aa    MW: 39816.9 Da    PI: 8.791
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00166.140genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-05146169123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     ++C+ Cg+ F+++ +L++H+   H
  Jcr4S00166.140 146 FPCTACGEIFPTPNLLEQHLAIkH 169
                     89*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.182146174IPR007087Zinc finger, C2H2
PROSITE patternPS000280148169IPR007087Zinc finger, C2H2
SuperFamilySSF563998.06E-11171358No hitNo description
Gene3DG3DSA:3.90.228.108.9E-7291358IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MAKGIVSVFN KFFSIFLLLV HLGCFIFTSK DNQPTKKRKI SPLSPSSSSS SFRLKPHRAL  60
SSSLSYLKRI FTSKACKNSS NVQSPVPTLT SARSSQQSIV SMVAPAEDQT SDIPPPRKMP  120
VPAGSCQESD ISTTNDQFFP LRNDIFPCTA CGEIFPTPNL LEQHLAIKHA VSELQDGDSG  180
KNIVYIIFKT GWSCKEKNPE ILRILKIHNS PKILSRFEEY RELVKAKAAR KRFRVNGNSS  240
VCNQQYCSVC GIIKCGFSPK MDGISTLSTS LRAHVAIPED IEEEFKFMNV KRAMLVCRVI  300
AGRVGSELEE EEEVNKEDGG FDSLLGRGGS GVHTRLDEEE LVVFNPRAVL PCFVIVYTV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020533879.10.0uncharacterized protein LOC105630636
TrEMBLA0A067LNS30.0A0A067LNS3_JATCU; Uncharacterized protein
STRINGcassava4.1_033577m0.0(Manihot esculenta)
STRINGXP_002525610.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106682936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.15e-92C2H2 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]