PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00148.10 | ||||||||
Common Name | JCGZ_01234, LOC105648776 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB | ||||||||
Protein Properties | Length: 260aa MW: 28386.7 Da PI: 5.1004 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.2 | 9.4e-19 | 13 | 58 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed l+++v+q+G+++W++I+ ++ gR++k+c++rw + Jcr4S00148.10 13 KGSWSPQEDANLIKLVEQHGPRNWSLISTGIP-GRSGKSCRLRWCNQ 58 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 55 | 1.9e-17 | 67 | 109 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ed ++v+a++ +G++ W+tIar ++ gRt++ +k++w++ Jcr4S00148.10 67 PFSPAEDAIIVQAHAIHGNK-WATIARLLP-GRTDNAIKNHWNST 109 79******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.289 | 8 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.33E-30 | 10 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-16 | 12 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-18 | 13 | 58 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-24 | 14 | 66 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.16E-15 | 15 | 57 | No hit | No description |
PROSITE profile | PS51294 | 21.985 | 64 | 114 | IPR017930 | Myb domain |
SMART | SM00717 | 9.4E-15 | 64 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.30E-12 | 67 | 110 | No hit | No description |
Pfam | PF00249 | 1.7E-14 | 67 | 109 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-23 | 67 | 113 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MGSFSGCGAD RIKGSWSPQE DANLIKLVEQ HGPRNWSLIS TGIPGRSGKS CRLRWCNQLS 60 PEVQHRPFSP AEDAIIVQAH AIHGNKWATI ARLLPGRTDN AIKNHWNSTL RRKRAAELSS 120 ASSEANSVMK RPCLDVSTES GSESGVKRQC LGAPPEDSSF DGEAGIVEPE TSLTLSPPGD 180 GFVRTEVGEK VKEVAVKGGE QDVDRQMVGE EEEEEEETCG LQIEETCLLT IMQRMIATEV 240 RSYIDRLRSK NGFAGPNADQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-39 | 12 | 113 | 3 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 4e-39 | 12 | 113 | 57 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-39 | 12 | 113 | 57 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-39 | 12 | 113 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 1e-39 | 12 | 113 | 3 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034625 | 0.0 | KM034625.1 Jatropha curcas clone JcMYB005 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012090668.1 | 0.0 | transcription factor MYB25 | ||||
Swissprot | O23160 | 5e-55 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A067LKB3 | 0.0 | A0A067LKB3_JATCU; MYB family protein | ||||
STRING | cassava4.1_022961m | 1e-123 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11600 | 29 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 1e-55 | myb domain protein 77 |
Link Out ? help Back to Top | |
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Entrez Gene | 105648776 |
Publications ? help Back to Top | |||
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