PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00095.80

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

G2-like

Protein Properties

Length: 339aa MW: 37336.1 Da PI: 7.9754

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00095.80	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.2	3.7e-33	19	72	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv+a+e+LGG++kAtPk +l+lm+vkgLt++hvkSHLQ+YR+ Jcr4S00095.80 19 PRLRWTPELHHCFVHAIERLGGQDKATPKLVLQLMDVKGLTISHVKSHLQMYRS 72 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.6E-32	15	76	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.47	15	75	IPR017930	Myb domain
SuperFamily	SSF46689	4.48E-16	17	74	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.4E-24	19	72	IPR006447	Myb domain, plants
Pfam	PF00249	9.7E-9	20	71	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MGSCGRSGTV RQYIRSKVPR LRWTPELHHC FVHAIERLGG QDKATPKLVL QLMDVKGLTI 60 SHVKSHLQMY RSMRSDLGKQ GSESSIVVSV YALVADFVLY FPLMVLIRRS ESKILNFTYR 120 NSSLQRRQSF DDGCCVDEVK PIEESDSHFI YSTTLPSKRS RIETRSSISD KNLQCSQGIC 180 ETAMNPYFLD DYMGIREGNG NGSSGGGFRC EQTHSKPKST GFSLPQDLYS LNSFKYAVQE 240 SDFLKIAKLD HSKCKSDAEI CKPDEATGSG RAQEEEGGGC CELSLSLSLP HLPSQRSNAS 300 STSEISEAVS SYSALKDCSG SSTGKRSINL DLSIALCGT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-19	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-19	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-19	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-19	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012072409.1	0.0	uncharacterized protein LOC105634199 isoform X2
TrEMBL	A0A067L2C0	0.0	A0A067L2C0_JATCU; Uncharacterized protein
STRING	XP_002521884.1	1e-146	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5539	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	1e-34	G2-like family protein