PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00055.70 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | CPP | ||||||||
Protein Properties | Length: 771aa MW: 85568.5 Da PI: 6.3508 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 48.2 | 2.2e-15 | 406 | 444 | 3 | 41 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +++CnCk+skClk+YCeCfaag++C +C+Ce+C+N+ e Jcr4S00055.70 406 CRRCNCKRSKCLKLYCECFAAGVYCVRSCTCENCFNRPE 444 789*********************************876 PP | |||||||
2 | TCR | 49.5 | 8.4e-16 | 492 | 531 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkkskClkkYCeC++a++ Cs+ C+Ce+C+N+ Jcr4S00055.70 492 RHKRGCNCKKSKCLKKYCECYQAKVGCSSGCRCEGCNNSF 531 589***********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.4E-15 | 404 | 445 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 34.63 | 405 | 532 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.7E-11 | 407 | 442 | IPR005172 | CRC domain |
SMART | SM01114 | 5.0E-16 | 492 | 533 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.9E-11 | 494 | 530 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 771 aa Download sequence Send to blast |
MCLLSEKIDY NSEESALFNY LTNLSPIKSV KGARYVQRFS QTNFSIPQPV FTSPRVGQHR 60 QTSFIKREEI DLADSDVYVH GDDTHLKSQL IHCYQKEDQL VSPSEYLADP AEMEENTNST 120 SLQAQPHNDR PKILETGFTS HEDTTIKNDD HDNSNMFLVP FSGAQHHEQF AVQAADGQDS 180 KDSGNYLSFH QPLQSVQAYK NSAESSRSVP RGSSKEADQH QRGIRRHLQF GVTIPCKHTD 240 NDAHDNANLS LPEHVPNFES LVPHQIEPSG IFGSWLAGSH AQAITFLSSF CPSQSLRSAQ 300 NCVNHDMSAA CTPSVLGLPS SSFTISGSVG SDSKTSMILA CNLHAQEEKQ MPNRTHTSAN 360 DLASISISSV SGEIHACMDD DHQENQAAAT VAARKRTKPV DDSEGCRRCN CKRSKCLKLY 420 CECFAAGVYC VRSCTCENCF NRPEYEDTVL DTRQQIQARN PLAFAPKVVI PGMNSPANLL 480 EDGNWTTPSS ARHKRGCNCK KSKCLKKYCE CYQAKVGCSS GCRCEGCNNS FGKKTVESKL 540 TFHDDDNAES IYRSAEKWEN ISHEQLETLE SPDGFVKAGR AHQVSSXXYE PYDSNVASSL 600 RSSGYFSFSE YSLTPKSYGT EALTEISSDS LFYNILKEDD TPEALKYTFT PTKAVKVTSP 660 NQKRVSPPQN RSQELRSSSS QGLQSGRKFI LPAVPSFPPL TPYSKLKDEN QQTDDSGPIL 720 LKADRQRVAC CFSQDIFQET ADRACHYLQD ILEALLPAML QNFGLFLPVQ G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 5e-17 | 409 | 529 | 14 | 120 | Protein lin-54 homolog |
5fd3_B | 5e-17 | 409 | 529 | 14 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP011975 | 0.0 | AP011975.1 Jatropha curcas DNA, clone: JHL25H03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020535282.1 | 0.0 | protein tesmin/TSO1-like CXC 3 isoform X2 | ||||
TrEMBL | A0A067KXY6 | 0.0 | A0A067KXY6_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_026451m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14277 | 14 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 7e-61 | Tesmin/TSO1-like CXC domain-containing protein |