PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc010930.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 453aa    MW: 49811.9 Da    PI: 6.7999
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc010930.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.3e-13287332454
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              +h e+Er+RR+++N++f  Lr+++P+       +++Ka+ L  Av YI+sL
  Itr_sc010930.1_g00001.1 287 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLSDAVSYINSL 332
                              799***********************6.....4****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.2E-5326201IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474595.23E-18282347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.276283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.17E-14286337No hitNo description
PfamPF000101.7E-10287332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-17287348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-16289338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MDELIGTSSS SSSITASLSQ PNHSTLQQRL QFILKTQTDS WAYAIFWQTS NEDDGRLFLA  60
WGDGFFQGTK GGGRGGVQTS HSTQQSERKK VISGIQALIG TQNSENGDLI TDAEWFYVMS  120
LARSFSAGDG VPGKALSMGS LVWLTGAHRL QMYNCERAKE AQIHGIQTLV CIPTGAGVVE  180
LGSLEIIKEN WTLVQQVKSL FPFPQETTLS FADIGLVSTH ELQQGRPGDA EKQEAPKRGA  240
DPESEHSDSD CLFLKEHPSV DRQQQQQQNA PKKRGRKPGA GRDTPVNHVE AERQRREKLN  300
HRFYALRSVV PNVSRMDKAS LLSDAVSYIN SLKTKVEELE CRQLQLRESK KVKIEAVGDN  360
QSSTSAASSA ASPVDVEVKI VGPDAMIRVQ SENANYPSAK LMNGLRELEL AVHHASISSV  420
NDIMLQDIVV KVPEGLRSED GLRAALLRRL DQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-40202033194Transcription factor MYC3
4rqw_B1e-40202033194Transcription factor MYC3
4rs9_A1e-40202033194Transcription factor MYC3
4yz6_A1e-40202033194Transcription factor MYC3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019154216.10.0PREDICTED: transcription factor MYC2-like isoform X2
RefseqXP_019154218.10.0PREDICTED: transcription factor MYC2-like isoform X3
TrEMBLA0A061DS370.0A0A061DS37_THECC; Basic helix-loop-helix DNA-binding family protein
STRINGEOX956140.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.12e-71bHLH family protein