PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc010164.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 149aa    MW: 16585.1 Da    PI: 10.7149
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc010164.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.1e-10110139130
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPka 30 
                              +r +h ++Er+RR+++N+ ++ Lr+l+P++
  Itr_sc010164.1_g00001.1 110 QRITHIAVERNRRKQMNEHLAVLRSLMPES 139
                              799*************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.74E-7108143No hitNo description
SuperFamilySSF474599.6E-9108140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-8108140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.849109149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-7110139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MALEALSTNE LFNLIIYDTF SATPLSHNDA SETTNLAAAA VGPKPAPQDL GGGLEGCSSM  60
PAWRRRHSVG GEMITPQSRP LQNLAVQGGG RKKRRRRPKI CKNKEEAETQ RITHIAVERN  120
RRKQMNEHLA VLRSLMPESY VQRCLALLR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19096RKKRRRR
29196KKRRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019190680.13e-65PREDICTED: transcription factor bHLH71-like
TrEMBLA0A2C9UHA06e-41A0A2C9UHA0_MANES; Uncharacterized protein
STRINGcassava4.1_012613m9e-42(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56322436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.15e-20bHLH family protein