PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc010164.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | bHLH | ||||||||
Protein Properties | Length: 149aa MW: 16585.1 Da PI: 10.7149 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.1 | 4.1e-10 | 110 | 139 | 1 | 30 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 1 rrrahnerErrRRdriNsafeeLrellPka 30 +r +h ++Er+RR+++N+ ++ Lr+l+P++ Itr_sc010164.1_g00001.1 110 QRITHIAVERNRRKQMNEHLAVLRSLMPES 139 799*************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.74E-7 | 108 | 143 | No hit | No description |
SuperFamily | SSF47459 | 9.6E-9 | 108 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-8 | 108 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.849 | 109 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-7 | 110 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MALEALSTNE LFNLIIYDTF SATPLSHNDA SETTNLAAAA VGPKPAPQDL GGGLEGCSSM 60 PAWRRRHSVG GEMITPQSRP LQNLAVQGGG RKKRRRRPKI CKNKEEAETQ RITHIAVERN 120 RRKQMNEHLA VLRSLMPESY VQRCLALLR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 90 | 96 | RKKRRRR |
2 | 91 | 96 | KKRRRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019190680.1 | 3e-65 | PREDICTED: transcription factor bHLH71-like | ||||
TrEMBL | A0A2C9UHA0 | 6e-41 | A0A2C9UHA0_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_012613m | 9e-42 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5632 | 24 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22490.1 | 5e-20 | bHLH family protein |