PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc003726.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 474aa MW: 49490 Da PI: 6.1405

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc003726.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.3	6.6e-09	280	319	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Itr_sc003726.1_g00001.1 280 LRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 319 6****************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.075	269	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.4E-9	275	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.9E-13	279	328	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.42E-13	279	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.2E-6	280	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.23E-9	281	323	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence Send to blast
MQETNSLQDL HNGGGVNGGH HQQQQQHLSM SNFDLPPTHD DFLEQILSAA SPWPDLSKSQ 60 PPWEAQHHSL PMPPLSNLNA AADDQAYHFD DQSSALLASK LQQYHINGSD GGAAAAAAKA 120 LMLQQQLLLS RALTGTGLRS PTGAAAGNGL LGVPLSLTGG DQNEANDNKF EALFNGFTGS 180 LGQTSSQPHH FHHPQGGEMQ AQSFGAPSAP PPMNQGLAST GSASTGGGAA PAQPKQQRVR 240 ARRGQATDPH SIAERFVSDS EFYGFCFVSF CAKPNVGCQL RRERIAERMK ALQELVPNAN 300 KTDKASMLDE IIDYVKFLQL QVKVLSMSRL GGAAAVAPLV ADMSSEGGDC IQGNGGRSSN 360 GTPAQAASSS NNDSMTMTEQ QVAKLMEEDM GTAMQYLQGK GLCLMPISLA TAISTSTTRN 420 TIANTLLRGG ATNGADAGGP SSPSMSVLTV QSAATMGNAT PDPSVKDATS VSKP

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence Send to blast

MQETNSLQDL HNGGGVNGGH HQQQQQHLSM SNFDLPPTHD DFLEQILSAA SPWPDLSKSQ  60
PPWEAQHHSL PMPPLSNLNA AADDQAYHFD DQSSALLASK LQQYHINGSD GGAAAAAAKA  120
LMLQQQLLLS RALTGTGLRS PTGAAAGNGL LGVPLSLTGG DQNEANDNKF EALFNGFTGS  180
LGQTSSQPHH FHHPQGGEMQ AQSFGAPSAP PPMNQGLAST GSASTGGGAA PAQPKQQRVR  240
ARRGQATDPH SIAERFVSDS EFYGFCFVSF CAKPNVGCQL RRERIAERMK ALQELVPNAN  300
KTDKASMLDE IIDYVKFLQL QVKVLSMSRL GGAAAVAPLV ADMSSEGGDC IQGNGGRSSN  360
GTPAQAASSS NNDSMTMTEQ QVAKLMEEDM GTAMQYLQGK GLCLMPISLA TAISTSTTRN  420
TIANTLLRGG ATNGADAGGP SSPSMSVLTV QSAATMGNAT PDPSVKDATS VSKP

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ444222	7e-76	DQ444222.1 Nicotiana plumbaginifolia Joka8 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019170794.1	0.0	PREDICTED: transcription factor bHLH66-like isoform X2
Swissprot	Q9ZUG9	1e-76	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A1S3XWA3	1e-149	A0A1S3XWA3_TOBAC; transcription factor bHLH66-like
STRING	XP_009596056.1	1e-149	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3759	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	4e-63	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]