PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc003178.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | Trihelix | ||||||||
Protein Properties | Length: 189aa MW: 21222.5 Da PI: 11.4584 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 33.6 | 1e-10 | 58 | 121 | 1 | 60 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkr 60 +W+k v L+ea++ ++ +r+klk+++W++v +++ +++ ++++qCk+k+e+++kr Itr_sc003178.1_g00001.1 58 EWSKGAVSSLLEAYEAKWVLRNRAKLKGQDWDDVVRHVsargNSTKSPKTQTQCKNKIESMKKR 121 5************************************954445555567888**********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.2E-12 | 56 | 122 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MREGMDTLQE PANNKNTSKE NPSLLSNGGP KPKQESPRSL ATAATTVMAA SDRLKRDEWS 60 KGAVSSLLEA YEAKWVLRNR AKLKGQDWDD VVRHVSARGN STKSPKTQTQ CKNKIESMKK 120 RTDRCPPPPP TPRRGRSILA SISSSMGMLP LISLNRLFFP RHRFLCRNSS RRCLLLRCSP 180 LQASLTRHL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019185327.1 | 8e-65 | PREDICTED: FH2 domain-containing protein 1 | ||||
TrEMBL | A0A059BI69 | 3e-40 | A0A059BI69_EUCGR; Uncharacterized protein | ||||
TrEMBL | A0A314U849 | 3e-40 | A0A314U849_PRUYE; Trihelix transcription factor ASIL2 | ||||
STRING | cassava4.1_012929m | 3e-41 | (Manihot esculenta) | ||||
STRING | XP_010067722.1 | 5e-41 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12251 | 16 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54390.1 | 3e-38 | sequence-specific DNA binding transcription factors |