PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc002061.1_g00007.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 391aa MW: 44022.3 Da PI: 6.5125

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc002061.1_g00007.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.2	2e-10	190	238	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L+el+P + +k Ka +L + ++Y+ksLq Itr_sc002061.1_g00007.1 190 NSHSLAERVRRERISERMRLLQELVPGC----NKITGKAVMLDEIINYVKSLQ 238 58************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.37E-16	185	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.42E-10	185	242	No hit	No description
PROSITE profile	PS50888	15.574	187	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-15	187	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-7	190	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-10	193	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MGTDEDNGEM GLHLFQCGSD WDPLVSMDQS LHYPVLLDDD QPINRNPHLL HYPSNSYLAD 60 MLPKITAFEN EGFSEMISSF GASDFHPNYV AAIQNSQEDC WNLEEVRKRK SSEPHSPSHK 120 NVERGLLKNT AVDNSECSKQ EDEKKQKPEN SSSLMAKLAG KQVKNDDSSN GKPRNENYVH 180 VRAKRGQATN SHSLAERVRR ERISERMRLL QELVPGCNKI TGKAVMLDEI INYVKSLQQQ 240 VETITFQFLS MKLATVNPEI NLDIQQAMTK EIFATQASNV PLRGFIHGIS SSQTFPGFQQ 300 GDFANIPNTI PPIRPSPQNL LSNDLHSILP TTLDSSSSMS IMDPNIYQGS KSWSERQQVL 360 HSSINAFLQT KIQTQLDCRI SVSDKKSSNY R

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MGTDEDNGEM GLHLFQCGSD WDPLVSMDQS LHYPVLLDDD QPINRNPHLL HYPSNSYLAD  60
MLPKITAFEN EGFSEMISSF GASDFHPNYV AAIQNSQEDC WNLEEVRKRK SSEPHSPSHK  120
NVERGLLKNT AVDNSECSKQ EDEKKQKPEN SSSLMAKLAG KQVKNDDSSN GKPRNENYVH  180
VRAKRGQATN SHSLAERVRR ERISERMRLL QELVPGCNKI TGKAVMLDEI INYVKSLQQQ  240
VETITFQFLS MKLATVNPEI NLDIQQAMTK EIFATQASNV PLRGFIHGIS SSQTFPGFQQ  300
GDFANIPNTI PPIRPSPQNL LSNDLHSILP TTLDSSSSMS IMDPNIYQGS KSWSERQQVL  360
HSSINAFLQT KIQTQLDCRI SVSDKKSSNY R

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP257466	1e-52	KP257466.1 Salvia miltiorrhiza clone 33 basic helix-loop-helix transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019152581.1	0.0	PREDICTED: transcription factor bHLH74-like isoform X1
TrEMBL	A0A3Q7G615	1e-104	A0A3Q7G615_SOLLC; Uncharacterized protein
STRING	Solyc04g077480.2.1	1e-105	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5250	24	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	2e-49	bHLH family protein