PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001873.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 217aa    MW: 22969.4 Da    PI: 6.4081
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001873.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.0003579101123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C +C++ F ++  L  H++ H
  Itr_sc001873.1_g00002.1  79 FPCLYCSRKFYTSQALGGHQNAH 101
                              89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.38E-676106No hitNo description
PROSITE profilePS5015710.92879106IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010582Biological Processfloral meristem determinacy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MADQDPNNLG MLYDFWSIQS SPPPSNSPPP VSVASPPALG GVHHHFDADL PASAADGGDT  60
QPSPPRRPSS SSSSTSRTFP CLYCSRKFYT SQALGGHQNA HKRERAATRR SLYPTAATIA  120
ASSTSNPFPS TPPSVPTYSN PASSYYWLQT PLLLHPTATA FHSLGDHYFA AAAAAPPPPP  180
PCDLEGLVLG PSSDPGLLKS LEPQNMEDNN IDLSLHL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019160989.12e-43PREDICTED: zinc finger protein KNUCKLES-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA92381723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.15e-16C2H2 family protein