PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001667.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 328aa    MW: 36174.5 Da    PI: 9.7454
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001667.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.67.2e-30164223159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              ++Dgy+WrKYGqK+ +++++pr+Y+rC++a +Cpvkkkv+rs ed+++++ tYegeHnh+
  Itr_sc001667.1_g00001.1 164 VKDGYQWRKYGQKVTRDNPCPRAYFRCSFApTCPVKKKVQRSVEDQSILVATYEGEHNHD 223
                              58***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-29154225IPR003657WRKY domain
PROSITE profilePS5081126.785159225IPR003657WRKY domain
SuperFamilySSF1182907.85E-26161225IPR003657WRKY domain
SMARTSM007741.2E-34164224IPR003657WRKY domain
PfamPF031062.2E-24165223IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEFTSLVDTS LGLNAKPIRV VSGKPKQEVE SNFIGLRMNI GNKDEAGELM EELNRVSAEN  60
RKLSEMLTVV CGNYNALREQ VREYMNKQQQ QSGSINDHNS SQVIMGSRKR KSPSNNNNAN  120
SESSSSDEDS AKKPRRELEH QHHIKANTSK IYVKTEASDT SLIVKDGYQW RKYGQKVTRD  180
NPCPRAYFRC SFAPTCPVKK KVQRSVEDQS ILVATYEGEH NHDLPSKLEQ PSATATAAAR  240
SLPPAAALNA QPRDLSPPKT APSVAIANGA KTASTPAGSS LPVDRPDFQQ FFIEQMASSL  300
TKDPTFKAAI AAAISGKFSP HNNNREKW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-221632251374WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106111SRKRKS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0280229e-62AB028022.1 Nicotiana tabacum wizz mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019167441.10.0PREDICTED: probable WRKY transcription factor 40
TrEMBLD3GDP71e-121D3GDP7_SOLLC; JA-induced WRKY protein
STRINGXP_009802478.11e-116(Nicotiana sylvestris)
STRINGXP_009617989.11e-116(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28552450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.16e-78WRKY DNA-binding protein 40