PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001667.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | WRKY | ||||||||
Protein Properties | Length: 328aa MW: 36174.5 Da PI: 9.7454 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.6 | 7.2e-30 | 164 | 223 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ +++++pr+Y+rC++a +Cpvkkkv+rs ed+++++ tYegeHnh+ Itr_sc001667.1_g00001.1 164 VKDGYQWRKYGQKVTRDNPCPRAYFRCSFApTCPVKKKVQRSVEDQSILVATYEGEHNHD 223 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-29 | 154 | 225 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.785 | 159 | 225 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.85E-26 | 161 | 225 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-34 | 164 | 224 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.2E-24 | 165 | 223 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MEFTSLVDTS LGLNAKPIRV VSGKPKQEVE SNFIGLRMNI GNKDEAGELM EELNRVSAEN 60 RKLSEMLTVV CGNYNALREQ VREYMNKQQQ QSGSINDHNS SQVIMGSRKR KSPSNNNNAN 120 SESSSSDEDS AKKPRRELEH QHHIKANTSK IYVKTEASDT SLIVKDGYQW RKYGQKVTRD 180 NPCPRAYFRC SFAPTCPVKK KVQRSVEDQS ILVATYEGEH NHDLPSKLEQ PSATATAAAR 240 SLPPAAALNA QPRDLSPPKT APSVAIANGA KTASTPAGSS LPVDRPDFQQ FFIEQMASSL 300 TKDPTFKAAI AAAISGKFSP HNNNREKW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 9e-22 | 163 | 225 | 13 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 106 | 111 | SRKRKS |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB028022 | 9e-62 | AB028022.1 Nicotiana tabacum wizz mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019167441.1 | 0.0 | PREDICTED: probable WRKY transcription factor 40 | ||||
TrEMBL | D3GDP7 | 1e-121 | D3GDP7_SOLLC; JA-induced WRKY protein | ||||
STRING | XP_009802478.1 | 1e-116 | (Nicotiana sylvestris) | ||||
STRING | XP_009617989.1 | 1e-116 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2855 | 24 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 6e-78 | WRKY DNA-binding protein 40 |