PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001502.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 414aa    MW: 45650.6 Da    PI: 6.9234
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001502.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.90.00013153471754
                              HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH  17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               ++   L++l+ +      +K + a++L +A+eYIk L
  Itr_sc001502.1_g00002.1 315 GDRVTALQQLVSPF-----GKTDTASVLHEAIEYIKFL 347
                              55666677777776.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.668298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.39E-5308351No hitNo description
SuperFamilySSF474594.19E-11308361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-8308356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MADDFMTAAG VCGGGNWWNP ARSMFGASPC SAASINDMGN FAWANNNDDH HHHHHQLVNM  60
KGRSSEESSE GSSVVLQELP KSHHHQTHNM SMDNSTLHML GIGLSPSSTA TTDWNQALVV  120
QTNERAMLQE DRNSRLNYGQ EIGVECSDSS FKQIVAKDFS NSNPSVTNFA PSYNNYPSNL  180
LQTLLDSDPQ PQQQQPLLSN QQISYAPAPA NFRPNLNDFS PPLLKPTFPA SFWNQSPASL  240
NDGRAAFLPS TQSQFLPSVF SDKSKPSRKS SNVDEARQSS AMAKKASNEE PAFKRPRIET  300
PSPLPTFKVR KEKLGDRVTA LQQLVSPFGK TDTASVLHEA IEYIKFLHDQ VNVLSAPYLK  360
NGCSVSQHHQ QDQEGRKAEL RSRGLCLVPI SSTFPVATET SSDFWTPTFG ASFR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019171731.10.0PREDICTED: transcription factor bHLH112-like
TrEMBLD7SSM51e-124D7SSM5_VITVI; Uncharacterized protein
STRINGXP_009629262.11e-125(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8602486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.18e-66bHLH family protein