PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000900.1_g00012.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 691aa    MW: 75097 Da    PI: 7.0756
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000900.1_g00012.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.91.7e-08267287526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                              +C++f++ GtC++Gd C ++Hg
  Itr_sc000900.1_g00012.1 267 PCPDFRK-GTCQRGDACEYSHG 287
                              8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.202.3E-1421147IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.51E-1423145IPR020683Ankyrin repeat-containing domain
PfamPF127968.9E-764135IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.37968138IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0866898IPR002110Ankyrin repeat
CDDcd002046.33E-1270146No hitNo description
PROSITE profilePS5008811.354103138IPR002110Ankyrin repeat
SMARTSM002480.024103135IPR002110Ankyrin repeat
SMARTSM003562.2E-5262288IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.835267289IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-6267287IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-4295325IPR000571Zinc finger, CCCH-type
SMARTSM0035622297320IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MCSGSRRKVV PDDLAMEGGI QGQEILLELS ANDDLRGFRT AVEEEGLDVN MSGLWYGRRI  60
GSKKMGYEER TPLMVASTFG SKQVLNYILE RGCAEINRAC GSDGATALHC AVAGGSTASL  120
DVIKLLLGYS ADENSVDANG NQAADLIPFC RFSSRKKMLE HVLKGGGDAD EGYGLIDHGT  180
FEKVEEQRVI YPNVSKDGSE RKEYPVDPSL PDIKNGIYGT DDFRMYTFKV KPCSRAYSHD  240
WTECPFVHPG ENARRRDPRK YHYSCVPCPD FRKGTCQRGD ACEYSHGIFE CWLHPAQYRT  300
RMCKDESRCN RRVCFFAHKP EELRPFYAST GSALPSPRSY SLGASSLDIA SISPLALGSP  360
SIMVPPTSTS PVTPSGASSP RSGSPRPNQP NMTTPTLQLH GSRLKTALNA RDMDLDFGLL  420
GLDHLRQEQL VDDMSALSSP SSWNKISATT AAFGASSSGE FSRHAGLTPT NLDDIFGAFD  480
HNVLSQLQGL SLDTGKSQLQ SPKGMQIRQN MSQNFLSSFP ASPSPSPART SSFRMDNPSD  540
SASAVLKNSR SAAFAKRSHS FVDRSAVKHG VASSPTSSAI AMPSTLSGWG SPDGKLDWGI  600
KKEDLSKFRK SASFGIRSSG NSVAMNGTPL STTADEPNAL WVQSLVNVAP AINHGQFSIE  660
DQQYCLNNRG GSEMHPAWAD QLYIDQEQIV A
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019167682.10.0PREDICTED: zinc finger CCCH domain-containing protein 66-like
RefseqXP_019167688.10.0PREDICTED: zinc finger CCCH domain-containing protein 66-like
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A067LPM40.0A0A067LPM4_JATCU; Uncharacterized protein
STRINGEOY337030.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25582245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein