PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Itr_sc000531.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 965aa MW: 106843 Da PI: 4.9412 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.9 | 1.1e-24 | 146 | 247 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f+k+lt sd++++g +++p++ ae+ ++++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD+v Itr_sc000531.1_g00002.1 146 FCKTLTASDTSTHGGFSVPRRAAEKLfppldySMQPPT-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSMFVGAKRLRAGDSV 230 99*********************999*****9555554.49********************************************* PP EEEE-SSSEE..EEEEE-S CS B3 81 vFkldgrsefelvvkvfrk 99 +F ++++ +l+++v+r+ Itr_sc000531.1_g00002.1 231 LFI--RDEKSQLMLGVRRA 247 ***..4567778***9997 PP | |||||||
2 | Auxin_resp | 115.2 | 5.7e-38 | 272 | 355 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPra++s+Fv++++k++k+++ +++s+GmRf m+fete+s +rr++Gt++g+sdldp+rWp+SkWr+L+ Itr_sc000531.1_g00002.1 272 AAHAAANRSPFTIFYNPRACPSKFVIPLAKYRKSIYgTQLSAGMRFGMMFETEESGKRRYMGTIIGISDLDPLRWPGSKWRCLQ 355 79**********************************9**********************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.7E-47 | 133 | 275 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.1E-42 | 139 | 260 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.49E-23 | 145 | 246 | No hit | No description |
PROSITE profile | PS50863 | 13.267 | 146 | 248 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-22 | 146 | 247 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.0E-25 | 146 | 248 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.9E-33 | 272 | 355 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 4.4E-10 | 849 | 939 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 26.302 | 852 | 936 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 1.67E-8 | 865 | 931 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048507 | Biological Process | meristem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 965 aa Download sequence Send to blast |
MGSVEEKVRP GGLVSGGNTL LEEMKLLKEM QDTTGIKKHI NSELWHACAG PLATLPQVGS 60 LVYYFPQGHS EQVAVSTNRT ATSQIPNYPN LPSQLLCQVH NVTLHADKDT DEIYAQMSLQ 120 PVNSEKDVFP IPDFGLKPSK HPTEFFCKTL TASDTSTHGG FSVPRRAAEK LFPPLDYSMQ 180 PPTQELVVRD LHDNTWTFRH IYRGQPKRHL LTTGWSMFVG AKRLRAGDSV LFIRDEKSQL 240 MLGVRRANRQ QTTLPSSVLS ADSMHIGVLA AAAHAAANRS PFTIFYNPRA CPSKFVIPLA 300 KYRKSIYGTQ LSAGMRFGMM FETEESGKRR YMGTIIGISD LDPLRWPGSK WRCLQAEWDE 360 PGCGDKQNRV SPWEVETPES LFIFPSLTGG LKRPFQPAFL VCSADXSDDS LKLTCHLESG 420 TQTEWDSLLS RPFIRGPENV YGDIQCSSIS NMWSEQVMKM LLRPQAVNNP GFVAPTLQET 480 IAHETITKAT IPQEARNAMQ GATIKQKPEL IPVEETSTPN ESNPQVQVNE PKNPLQQVNQ 540 LQCPGKLENQ TVLATPSEVA KSEPMLTSDQ LSRLQSLGQC NDEKLPLTPT NAHNHATRGA 600 FLNPNNDSFP VQGSPWLVQA QFDSHIPQAP QIDPAIMNGF LQCPDNREWG SYLPSCQSLS 660 GFLRTSEPFS TLRKQDQPFM LPDAVNPLPT SVGQELWDNQ LNDAKCFPQG NLEALLPSED 720 ISNLQSIMAD SYGLKDLSNQ SQRQSDYSCL NFDGSNSGSV VIDPSVSSAV LDEFCTLRNG 780 DFQNPAEYLV GNFSSSQDVQ SQITSASLAD SQNFSLQDFA DNSGGASSSN VEFDETTLLQ 840 NSTWQPVAPR VRTYTKIQKA GSVGRSIDVS SFNNYYELRS EIERMFGLEG LLNDSKGSDW 900 KLVYVDFEND VLLVGDDPWE EFVGCVRCIR ILSPSEVQQM GEEGMQILNA NAMQAVHVSA 960 TDGCH |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 1 | 380 | 5 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00153 | DAP | Transfer from AT1G19850 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019174661.1 | 0.0 | PREDICTED: auxin response factor 5 isoform X1 | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | A0A314L7C1 | 0.0 | A0A314L7C1_NICAT; Auxin response factor | ||||
STRING | XP_009778804.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5859 | 23 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |